Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300
| | | | | | | | | | | | | | | |
| SS Seq | CCCCHHHHHHHHCCCCCCCCCCCCSSCCCCCCCCCCCCCCCCCCCCCCSSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSCCCCCSSSCCCCCCCCCCSSCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC MGCRCCKIIQSYLFDPVQVPSPGYVNEVNSCKLDEDDTDKLKGKWSSEVLVQKNDPQRQGSKKTESSSRTADPWEPCWPHQGPLPQGDAGGEHHACGVNGIGPAATPQPTGNSSPTQDDRGSWASTANTVPPTQPFLEGGGTRKQDCVLLASEGTQVMRNGDSRAPSEAESFALEVQDHVFQIPAPDYLQHWGPAGDNVDHNEKDCVFKNHTEDESLEGIQPPVGEHGLNTPFSVRRSWDSLNEDVETEVLSICFNEKGPVHAMPVVDSGNRQEDTHGSDGDGDGEIVDEDAAVAEALAALEAATAGEDLDETD |
1 | 6f1tg | 0.07 | 0.07 | 2.76 | 1.06 | SPARKS-K | | SEQINIKLSLNRQFFDERWSKHRVVSCLDWSSQYPENNEDAPHEPDGVALVW--NMKYKKTTPEYVFHCQSAVMSATFAKFHPNLVVGGTYSGQIVLWDNRSNKRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLIMLSHPQDSMELVHKQSKAVAVTSMSF-PVGDVNNFVVGSEEGSVYTACRHGSKAGISEMFEGHQGPITGIHCHAAVGAVDFSHLFVTSSFDWTVKLWSTKNNKPLYEDNAGYVYDVMWSPTHPALFACLNNDTEVPTASISVEEQIAVPRNDEWARFGRTLAEINAN---------- |
2 | 1vt4I3 | 0.10 | 0.10 | 3.58 | 1.29 | MapAlign | | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG |
3 | 2oajA | 0.09 | 0.09 | 3.28 | 0.72 | CEthreader | | ---------KNKIFSLAETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIY----GQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP |
4 | 4i2wA1 | 0.07 | 0.07 | 2.98 | 0.55 | EigenThreader | | YIKADELYTEALQLTTDEDKALRPVLYRNRAARLKRDDFEGAQSDCTKALEFDGADVKALFRRSLAREQLGNVGPAFQDAKEALRLSPNDKGIVEVLQRLVKANNDKVTDEKLAFRGEAKDTEQKTALNNLLVLCRESESGATGVWNQGALVPFVLNLINDASENEEVTVTAIRILDETIKNSVRCKFLAHDPDLCKKSTLVQRVFNAAKDRQKEKPDLQDPKVGAVQRETCIDHDGGIPRGWSWKFVEALLDVASQIPELCEYPVSAEFFNALISRCTNDDEGHKYRIKLSCFLITDIGINLITNDQLTPILE |
5 | 3cnfB | 0.10 | 0.09 | 3.30 | 0.40 | FFAS-3D | | LSTSQIRHAIERIAQITDVDSTDYGKLTLRFLGTLTRSLKMQ-----NAQIRRIRPDGTVLRYDDQIDIEAFRWSRYFLDELQLRRLSVGLRLITNPFNGVDPDFVPDVPEGYVAVQYAHRLFSSSLANKRNRVTYTHPPTGMAYPSPTGRPHVHMTINERAGMSKLVADNIIASVIKSVVDILDIEY-------TAEVMTPSEGYTQHVDAESIMTAPKGKLFHLQFMDGLLRPEASGEDMRLIYPLQPIS----VARSMRAIVNHNEVDRPREMDTGTLSRNGDLLYSP------------VANGQ------ |
6 | 5kcs1w | 0.08 | 0.08 | 2.99 | 1.04 | SPARKS-K | | GIDNLIEVITNKFYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSV------RVSEKEKIKVTEMYTSINGELCKIDRAYSGE-IVILQNEFLKLNSVLGDTKLLPQRK---KIENPHPLLQTTVEPSKPEQREMLLDSDSDPLLRYYVDSTTHEIILSFLLLQEKYHVEIEITEPERPLKNAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEGIRYGCEQ-------GLYGWNVTDCKICFKYGLYYSPVST-----PADFRMLAPIVLEQVKAGTELLEPY |
7 | 5mz61 | 0.07 | 0.04 | 1.88 | 0.67 | DEthreader | | ---------ASSEYFQGLAKYQRTACKMFTWRACRSDREIFAIPLCFYFELCR-------FLGEMRECALVNVTTAQTRSMSAILRVLKSSRVQTTLYYSIIEI-------YLQQRTTDMILAVTQ-LGRQLEFPMECNDKERFVRAMRMLFYAWESIRQCKRGLMSGHDRFKTCVQVQIAMADDK-------------------VEMDKFTLFVVQLALMP--KKYTY-LVICPHLS--------W--------------YPYVGRP-VMFFIGGVMPRS--------------------------------- |
8 | 2oajA | 0.04 | 0.04 | 1.92 | 1.08 | MapAlign | | IATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLIGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM----IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLANKLWLGALSIPKMQNLSKGLCI---- |
9 | 2atyA | 0.10 | 0.09 | 3.45 | 0.87 | MUSTER | | ISCGSPPPILNGRISYYSTPTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKPAPKCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKNMWGPTRLPTCVSVFPLEGSIEGRGGSELADPEVPRDCGCKPCICTVPEVSSVIFPPKPKDVLTITLTPKVVVDISKDDPEVQFVEVHTAQTQPREEQFNSTFRSVSMHQDWLNGAFPAPIEKTISKTKGRPKAPQLYTIPPPKEQMKVSLTTDFFPEDITVEGQPAENYKNTQPIMNTNESYFVY--------SKLN-----QKSNWEA |
10 | 2pffB | 0.18 | 0.17 | 5.48 | 0.49 | HHsearch | | MAKRPFKKSNSALFRAVGEGNAQAIFQGNTDDYFEELRD---LYQTYHVLVGDLETLSELIRTTLDAEKTQGLNILEWLNPSNTPDKDYLLSSCPAKLLGFTPGE-LRSYLKGATSQAETDSWESFFVSVSLPPSILEDSNEGVPSPMLSISNLTQEQNKTNSHLGKQVEISLVNAPSDQSRIPFSE---------------RKLKFSNRFLPVFHSHLLVPASKLVKNNVSFNAKDIQIPVYDTFDLRVLSGSISERIVDCIIR---LPVKWETTTQFK---ATHILDFGPGGASGLGVLVAGTLDINPDDDY |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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