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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.49 | 1k9iH | 0.369 | 1.44 | 0.418 | 0.386 | 1.13 | UUU | complex1.pdb.gz | 234,235,236,267,269,271,280,286,288,292,293 |
| 2 | 0.27 | 2ox9A | 0.382 | 1.75 | 0.409 | 0.402 | 1.59 | CA | complex2.pdb.gz | 267,269,280,292,293 |
| 3 | 0.19 | 3p5gA | 0.370 | 1.44 | 0.287 | 0.386 | 0.90 | UUU | complex3.pdb.gz | 264,265,266,267,269,280,286,292,293 |
| 4 | 0.06 | 2ox8C | 0.379 | 1.70 | 0.413 | 0.399 | 1.12 | CA | complex4.pdb.gz | 243,248,270,280,281 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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