Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200
| | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHHCHHHCCCCSSSSSCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC MAATKTASYDEHFRPEKLREWPEPESVSLMEVLAREDIDEAVCAILFKENSIVKVTVPPFVDPLFQRQQEVDEERRTGLQCETGKRHSIKELEEIEKARLHASSPYFTFTSHCVIPKEWHKASARARSKTYKYSPEKLIYADKKQKRKEKKTADLSQAAFERQFLSSKLSQKNKVGERKGLVSRGLGRGWHAGLCSTHEQHILVPE |
1 | 1h09A | 0.06 | 0.06 | 2.70 | 0.41 | CEthreader | | EAEREAQFFLDNVPMQVKYLVLDYEDDPSGDAQANTNACLRFMQMIADAGYKPIYYSYKPFTHDNVDYQQILAQFPNSLWIAGYGLNDGTANFEYFPSMDGIRWWQYSSNPFDKNIVDDEEDDKPKTAGTWKQDSKGWWFRRNNGSFPYNKWEKIGGVWYYFDSKGYCLTSEWLKDNEKWYYLKDNGAMATGWVLVGSEWYYMDDS |
2 | 3dslA | 0.05 | 0.05 | 2.24 | 0.55 | EigenThreader | | TVKPDVDYTLNSFAEWRKTDLLTRKKHIG--------------SMCHPKRSVAIVEDYSPINLVVAVIMAHEMGHNLGCIMGPSKFFSNCSYIQCWDFIMKENPNECCDAATCKLKSGSQCGHGDCCEQCKFSKSGTHCTGQSSECCPIMYHQCYALFGSCFKDNQKGNYYGYCIPCAPEDVKCGRLYMVLPGTKCADGKVCSNGH |
3 | 3iz5T | 0.18 | 0.15 | 4.74 | 0.45 | FFAS-3D | | MVSLKLQKRSSVLKCGKGKVWLDPNEVNISMANSRQNIRKLVKD--------GFIIRKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGMRVLRRLLRKYREAK---------KIDKHMYHDMYLKVKGNMFKNKRVESIHKSKAEKAREKTLSDQFEAKRAKS-KASRERKIARREERLAPGPER--------------------- |
4 | 7abiA | 0.11 | 0.11 | 4.01 | 0.76 | SPARKS-K | | NNLQDVWETSEVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINIIRGLQFQYYGLVMDLLVLHRASEMAGPPQSFQDIATEAAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVYNNKKCWPRDARMRLMKHDVNLGRAIKNRLPRSVQWENSFVSVYSKDNPNLLFN-MCGFECRILPKC |
5 | 2fgeA | 0.21 | 0.07 | 2.17 | 0.53 | CNFpred | | ---------------------------ALKTRIAEEGSKAVFSPLIEKNSHRVTIEMQPD--PEKATQEEVEEKNILEKVK---AAMTEEDLAELARATE---------------------------------------------------------------------------------------------------------- |
6 | 5wbiA | 0.09 | 0.07 | 2.79 | 0.83 | DEthreader | | LCL--IIPCARIEPFAP--LQLD--PTVDEVRKLCLTCRYARVLFH------DTSTKESLIRIQLPQLVPSTEFQP---------------------SQCHRFALVLLGRFLMWAVAITKILMAFVLAVCLLIMGEANAFAAIIKSLLDVSSSIQLYASTVTVLSAGLLSVSASQGHGSQLIK---GIIRYIGSAADSFVSIYTH- |
7 | 4qbdA | 0.05 | 0.05 | 2.44 | 0.76 | MapAlign | | VSVGLQGGEVRDIKSEKVEKVNTVLNTPCVLHNLRFAISDGAYVDMLTNHVNQSMLITGESGAGKTENTKKVIAYFAIHFGPTGKLAKEDVYRITAAVMHMGGMKFKQRGREEQAEQKNLLKPRIKVGNEFVTQGRNVQQVTNSIGALCKGVFDRLFKWLVKKCNETLNTHLGKSAPFQKPKPPKPGQQAAHFAIAHYAGCVSYNI |
8 | 3akyA | 0.12 | 0.11 | 3.91 | 0.48 | MUSTER | | PGAGKGT--------PNLQERFH--TGDMLRSQIAKQLGLEAKKIMDQGGL---VSDDIMVNMIKDELTNNPACKNGFIL--DGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVAHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHTEPIVDFYKKTGIWAG------ASQPPATVWADFLGKN |
9 | 1vt4I | 0.15 | 0.15 | 4.90 | 1.14 | HHsearch | | DAFVDNFDCKDVQDMP--KSILSKEEIDHMSKDAVSGTLRLFWTLLSKQEEMVQQRQPSMMTRMYIEQRDRYNDNQVFAKYNVSRLQ---PYLKLRQALL--ELRPALIDGVLGSGKTWVALDVCYMFKIWNCSPEKLLYQIDPNWTSRSHSSNIKQAELRRLLKSVLLNVQNAKASCKILLTTRFKQDFLSAATTTLDHHSMTLT |
10 | 5ffnA | 0.05 | 0.05 | 2.44 | 0.41 | CEthreader | | VLAHGGSNGQGVYGVAPAYKVLGDNGSGYSDDIAAAIRHVADEASRTGSKVVINMSLGSSAKDSLIASAVDYAYGKVAAAGNSGSGSNTIGFPGGLVNAVAVAALENVQQNGTYRVADFSSRGNPATAGDYIIQERDIEVSAPGASVESTWYTGGYNTISGTSMATPHVASLSHSQLRTELQNRAKVYDIKGGIGAGTGDDYASGF |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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