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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.12 | 1f59B | 0.788 | 2.05 | 0.111 | 0.926 | 0.67 | III | complex1.pdb.gz | 56,60,63,64,111,115 |
| 2 | 0.11 | 1bk6A | 0.739 | 2.42 | 0.129 | 0.912 | 0.52 | III | complex2.pdb.gz | 17,18,19,23,56,60,80,106,110 |
| 3 | 0.09 | 1o6oA | 0.801 | 1.96 | 0.111 | 0.926 | 0.52 | III | complex3.pdb.gz | 55,58,59,63,113 |
| 4 | 0.09 | 1ejlI | 0.737 | 2.77 | 0.118 | 0.934 | 0.67 | III | complex4.pdb.gz | 20,21,22,56,60,62,63,103,106,110,113,115 |
| 5 | 0.09 | 1un0B | 0.741 | 2.43 | 0.129 | 0.912 | 0.53 | III | complex5.pdb.gz | 11,14,18,21,52,53,56,62,63,64,102,103,106,109,110,111,113,116 |
| 6 | 0.05 | 1f59A | 0.802 | 1.94 | 0.111 | 0.926 | 0.60 | III | complex6.pdb.gz | 58,59,62,63,115 |
| 7 | 0.04 | 3gs30 | 0.720 | 2.40 | 0.153 | 0.868 | 0.76 | III | complex7.pdb.gz | 99,102,105,106,109,113 |
| 8 | 0.03 | 1iq1C | 0.736 | 2.77 | 0.118 | 0.934 | 0.60 | III | complex8.pdb.gz | 20,21,22,25,59,63,66,67,76,106,109,113,116,117 |
| 9 | 0.02 | 3l6xA | 0.765 | 2.46 | 0.071 | 0.934 | 0.51 | III | complex9.pdb.gz | 11,12,14,15,17,18,22,28,59,60,63,67,109,112,113,116,119 |
| 10 | 0.01 | 1qgk1 | 0.195 | 2.77 | 0.023 | 0.235 | 0.56 | III | complex10.pdb.gz | 100,101,104,105,108,111,112,113,116 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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