Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCSSCCCCCCCCCCCCSSSSSSSSSCCCCCCSSSSCCCCCCSSSSCCCCCCCCCCCCCSSSSSSSSCCCCSSSSCCCCCCSSSSSCCCCSSSSSCCCCCCCSSSSCCSSSSSSCSCCCCCCCCCCCCSCCSSSSSCCCCCSSSSCCCCCCCCCCCCSSSSSCCCSSSSSCCC VPVPNSSSSSSSSNSLVSAAENPPQRLGMCAKEMVIFFGHPRDPFLCCDPYSGDLYKVPSPLTCLAHTRTVTTLAVCISPDHDIYLAAQPRTDLWVYKPAQNSWQQLADRTTLGLLQFDSNFFCLSARVYPSCLEPGQSFLTEEEEIPSESSTEWDLGGFSEPDSESGSSSSLSDDDFWVRVAPQ |
1 | 1e8uB | 0.05 | 0.05 | 2.26 | 1.17 | DEthreader | | VTFYPSFQHLNFIPAASISLDDQNRKSCSVSAGCDMLCSKPTLMAHGRLGFGQYHEKDLDVTTLFEDWVANYPGVGGGSFIRVWFSVYGIQQAILSIKVSSEDPVLTVPPNVTLMGAEGRILLYQR--GSS------YFSPAL-LYPMTVSNATLHSPYTFAFTRPGVYTDPYPFLGVFGTTAEV |
2 | 5gqtA3 | 0.09 | 0.07 | 2.64 | 1.51 | SPARKS-K | | -----------------QKGEGPGLRCSHGVGNKIYSFGGIDKHLYVFDLETRTWSISPATGD---VPHLSCLGVRMVSVGSTLYVFGGQYNGFYSFDTTTNEWKLLTPVGPTPRSFHSMAAYVFGGVSATA--------RLNTLDSYNIVDKKWFHCSTPGLTAR------------------- |
3 | 2dyhA | 0.15 | 0.13 | 4.39 | 0.42 | MapAlign | | ---------NPSNGSWLRLADLQVPRLAGCVVGLLYAVGGDSSALDCYNPMTNQWSPCASMSVP------RNR-IGVGVIDGHIYAVGGSHSSVERYEPERDEWHLVAPMLTRRI----GVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMIGAGVCVLHNCIYAAGGQLNSVERYDV- |
4 | 2dyhA | 0.12 | 0.11 | 4.01 | 0.43 | CEthreader | | TDSSALDCYNPMTNQWSPCASMSVPRNRIGVGGHIYAVGGHHSSVERYEPERDEWHLVAPMLTRR-------IGVGVAVLNRLLYAVGGFLNSAECYYPERNEWRMITPMNTIRSGAG----VCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMRHHFLDSVECYDPDSDTWSEVTRM |
5 | 6gy5A | 0.14 | 0.13 | 4.42 | 1.02 | MUSTER | | SSYLNSDPKTNQWSSDVAPTSTCRTSVGVAVLGFLYAVGGQDNIVERYDPKENKWTRVASMSTRR-------LGVAVAVLGGFLYAVGGSDNTVERYNPQENRWHTIAPMGHLGCAVYQDMIYAVGGRDD--------TTELSSAERYNPRTNQWSPV-VAMTSRRSGVGLAVVNGQLMAVFDGT |
6 | 5a10A | 0.09 | 0.09 | 3.27 | 1.73 | HHsearch | | ---SPEFMARTLQGEWMKVEQVPAPRSSHGIGDKLYCFGGEDNDLYVFDFNTHTWSIAPAVPKTR------VLGTRMVAVGTKLYVFGGRFEDFYSYDTVKEEWKFLTKLP-EARTFHSMTSDVFGGVSKGGLN--ATPFRFRTIEAYNIAEGKWAQLPDPGEYESNRVHCYDPATQKWTEVETT |
7 | 2dyhA | 0.14 | 0.12 | 4.06 | 1.22 | FFAS-3D | | ---------NPSNGSWLRLADLQVPRSGLAGGLLYAVGGRNNSALDCYNPMTNQWSPCASM-------SVPRNRIGVGVIDGHIYAVGGSLNSVERYDVETETWTFVAHRSALGITVHQGKIYVLGGY--------DGHTFLDSVECYDPDSDTWSEVTRMTSGRSGVGVAVTMEPCRKQI---- |
8 | 4yy8A2 | 0.11 | 0.10 | 3.72 | 0.55 | EigenThreader | | GNNYDYKALFELRDVSSNLNIPRRNNCGVTSNGRIYCIGSIIPNVEAYDHRMKAWVEVAPLNTPR-----SSAMCVAFD--NKIYVIGGRLNSIEVYEEKMNKWEQFPYALLEARSSGNQIYVVGGIEHNILDSFNKGVPEKKMNFAATLSSYIITGGENGE--VLNSCHFFSPDTNEWQLGPSL |
9 | 2wozA | 0.17 | 0.13 | 4.26 | 2.06 | CNFpred | | --------------------------GLGEVDDKIYVVAGKLDSVLCYDPVAAKWSEVKNLPI-------KVYGHNVISHNGMIYCLGGKTNRVFIYNPKKGDWKDLAPMKT-PRSMFGVAIVIAGGVTE--------DGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLA--GSLYAIGGF |
10 | 5a10A | 0.08 | 0.07 | 2.83 | 1.17 | DEthreader | | WMKVEQDKLYAKLVYSFLTKGPEARTFSMTSDNHVYVFGGRFRTIEAYNIAEGKWAQLPDPGEDF----EKRGMAGFLVVQGKLWVFYGESNRVHCYDPATQKWTEVETTGKPSRRSCFAHAAIFG--GEI-GPG--TLSREG-FALDT-ET-LVWERYEKPSNRGWVASTTTTGKKGLLVHGGD |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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