Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSCCCCC SSNPCHFGSPSGAAEGGGGQDDLPDLYCSETQSKKVFLNKAALESQNKVMQENSSSFSDLSERRERSSVPIPIPADTRDNEVNHALEQQEAKRREAEQAASEAAGGDTTPGSSPSSLYYEEPLGQPPRFTQKLRSREVPEGTRVQLDCIEASSEAGVVTTRQTRPDSFQERFNGQATKVLLEQHQLQNPPPSSPKEFPFSMTVLNSNAPPAVTTSSKQVKAPSSQTFSLARPKYFFPSTNTTAATVAPSSSPVFTLSSTP |
1 | 1f42A | 0.08 | 0.07 | 2.62 | 0.82 | CEthreader | | VKEFGDAGQYTCHKGGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKTTISTDLTFSVKSSRGGVTCGAATLSAERVRGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYENYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKATVICRKNASISVRAQDRYYSSSWSEWASVPCS--------------------------------------- |
2 | 5z2cA | 0.08 | 0.08 | 3.18 | 0.63 | EigenThreader | | IGAGLQQLLASLRASILARDCAAAAAIVFLVDRFLYGLGKLLQVAKGLHKLQPATPIAPQVVIRQARISVNSGKLLKAEYILSSLISNVQSVCIQIRGQILQKLGMWYEAAELIWASIVGYLALPQPDSLGILADIFVSMAEACKLAAAFSAYTPLFVLTAVNIRGTCLLSYSSLCEAKEAFEIGLLTKRDDEPVTGFVKAAFGLTTVHRRLHGETGTVHAASQLCKEAMGKLYNFSTSSQEVMSVIAQVKEHLQVQSFS |
3 | 6igz6 | 0.14 | 0.11 | 3.83 | 0.42 | FFAS-3D | | ------STPPAHLDGSMTGDFGWPLGLGANPEAMTWFREAELQNGRWAMMGVFGILVQELVKPDVFWYDAPTKIDLPFNIIGIVAFQAFAMHYVEIRRWQDLRKPGSVNKDPIFSNYSLPEHAPFVPGDIEELKLKELKNARLSML------AFVGFV---------MQAQITGKGPIACWTDH-LADP--------------FGTTIFSKAVITLGGAVKPTCQ----------IPDHVAFQGIDIP--TPCFFEGFWP |
4 | 3dl8A | 0.08 | 0.08 | 3.00 | 0.85 | SPARKS-K | | YKEQMVQRPLHSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDEDGQVVIVDSFTGRLMKGRRYSE--GLHQAIEAKEGLEIQ------------NESMTLATITFQNYFRMYEKTEEEEFRNIYNMQVVTIPTNRPVVRD------DRPDLIYRTMEAVAEDVAQRYMTGQPVLVGTVAVETSELISNKGIPHQVLNAKN |
5 | 4jn4A | 0.13 | 0.05 | 1.60 | 0.50 | CNFpred | | --------------------------------FDSRLINYLVEEFKKDQGI-----------------------------DLRNDPLAMQRLKEAAEKAK------------------------------IELSSA---QQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVAL------------------------------------------------------------------------- |
6 | 1bxrA | 0.10 | 0.07 | 2.55 | 0.67 | DEthreader | | -I-ILGAGP-I-V-I---G-QACEFDYGAQACKA------------------------------EMADAEPDAVLETMIATADAIDKAEDRRRFDVTARSGVADVGFPCIIRPGGGLSPT--------IEDYCVSTIIVRGVIVQYG-------------GQTPLKLARALEAASPDAIRICVLIGIMLPAYTLQDMRVQAFELQ----VRGLMNVQF------------------VNPRAARTVSKATGVPLKVRVMAG |
7 | 1e07A | 0.08 | 0.08 | 3.06 | 1.24 | MapAlign | | ----KPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQTEKNSGLYTCQANNASGHSRTTVKTITVSTCEPEAQNTTYLWWVNSPRLQLSNGNRTLTAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISIAKITPNNNGTYACFVSNLATGRNNSIVKSI |
8 | 5ay6A | 0.13 | 0.13 | 4.50 | 0.60 | MUSTER | | SEQPVAAAVSYKVGTAGSPSKTNVVDSATNSHNYDVVYSSTGIANPVSGYDAATNELVSSTIDYKGASPVTGSMTTTRINAAGTTVNLADLNASGADDAEVVAGKLYDPSTWSMSDYAKDNSKGVKPDFEVQIPSDSKGGQRTVTLSMLKGPGPNQWYAELRAKPGDLANNGNGQISTGIIE--KLKNTGSLFGTTSPTAITIKSSGYIAPTVTPPAVQPPTPPDEQEVQ----IDLASAAGGLTQYNSQSVVQSVNTN- |
9 | 3b43A | 0.16 | 0.15 | 5.13 | 0.63 | HHsearch | | MEPPYFIEPLEHVEAIGEPVDGTPEIAHTKLRFKSLVINKVSDKAENSVLKERPPSFARKLKDHEGFCRGSEPLQVSWYKD-GELLKDDNVATLDQSHVGCSASNPLGTA-SSSAKLTL-SEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKIRPGKFRMSKDKRELKIMSESIHILNVDSADIG--EYQCKASNDVAPPRFVKKLSDISTVVGEEVQLFKDGEIVRESDLQFSRAEPANAGKYTCQIKN |
10 | 6wznA | 0.05 | 0.05 | 2.45 | 0.79 | CEthreader | | KPEMKIKLRMEGAVNGHKFVIEGEGIGKPYEGTQTLDLTVEEGAPLPFSYDILTPAFNRAFTKYPEDIPDYFKQAFPEGYSWERSMTYEDQGICIATSDITMEGDCFFYEIRFDGTNFPPNGPVMQKKTLKWEPSTEKMYVLKGDVEMALLLEGGGHYRCDFKTTYKAKKDVRVRLYEHAEARYSGGGSSSGTQVQLVESGGGLVQPGGSLRLSCAASGLTFSNYAMNWVRQAPGKGLEWVSSISSRGDTTYYADSVKGR |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|