Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420
| | | | | | | | | | | | | | | | | | | | | |
| SS Seq | CCCCCCCSSSCCCCCCCCCSSSSSSSCCCCCCSSCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCSSSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCCC MGNKQPQKVTVPTGTALQGVVLIVSTLHQPGGWICGKDPCCSLRPLSNSVQNALACKSKQDYQAGILFKTRAFISRDCGSDAAEDSASKGETYTLTLEHKGAGEGDLRPRGQPGWCRLGDPRRDSARPVAAIEGPCPGAARASRVLRGRGFSRNPRGRGLPSGAGWRGAGGAGEGAVTFPERRGDVRRKGAGRARFKWHSLSSELRAVWAAAGYISREPGRRGADGDSSGGERLGARRNSAPRAPCPPTGPPARPPSRGAPARAREGRRHPAADLDPPPGEPPAAASRGAPAQRPPSESPGAPPPGPADAGGAMAAKPGELMGICSSYQAVMPHFVCLADEFPQPVRPAKLPKGRGRLRRPRQSRFKTQPVTFDEIQEVEEEGVSPMEEEKAKKSFLQSLECLRRSTQSLSLQREQLSSCKLRNSLDSSDSDSAL |
1 | 1vt4I3 | 0.12 | 0.12 | 4.35 | 0.89 | CEthreader | | EAHKQVQRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG |
2 | 6ok3A | 0.07 | 0.06 | 2.62 | 0.83 | EigenThreader | | --------EENANKIILDEE-----AVIQCNERYKTENDEKGDEETVSWCRKAALFGLVVALWWKAAEQNHAALVLGNLHRKGQCIAENYPKAIAYWKRAAVQNNVWAYHNLGTAYYDGIGVDNPHEAVRWWAAELGFPESQNNLGALYNDGNGVDRDYQEAVFWYRSALQGDELGQYNLGVAYYYGRGIKKDFSEA---VSWYKKSAEQAQHNLGVTYYEGEGIKKDYAKAVYWWAAEQGIPQSQYNLGIAYEEGWGAEKN----PENAVFWYRAAEQGHADAQNRLGIAYRYGTGVRKNPALSVKWLEKAAKQGLARAQFNLGKTFYIGTDKAVYWFIKAANQGFTEAQAYIGIYFGKYV----ANEKKGFYWLKKAAEKDSAAQAFLGALYIAGGVALTKKAALQGNYEAQTLLGFCYENGLEVKKDLIAAY |
3 | 2akhY | 0.13 | 0.11 | 3.67 | 0.47 | FFAS-3D | | ----------AKQ----------------PGLDFQSGELKRRLLFVIGALIVFRIGSFISIFALGIPYISASIIIQ-------------------LLTVVHPTLAEIKKEGESGRRKISQYTRYGTLVLAIFQ----SIGIATGLPNMPGMQGLVINPGFAFYTGTMTERGIGNGISIIPPAIAHTIEQARQGDLHFLVLLLVAVLVFAVTFFVVFVERGQR---------------RIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIPASSIILFPATIASWFGGGTGWNWLTTISLYLQPGQPLYV------------LLYASAIIFFCFFYTALVFNPRETAD-NLKKSGAFVPGIRPGE-QTAKYIDKVMTRLTLVGALYITFICLIPEFMRDAMKLLIVVVVIMDFMAQVQTLMMSSQYESALKKA-- |
4 | 3j3iA | 0.11 | 0.10 | 3.75 | 0.86 | SPARKS-K | | MCREYPPPQSVPADA--EDVCIVSQGRQIQPG--------SAVTLNPGLVYSSILTYAMDTSCTDLLQEAQIIACSLQENRYFSR-IGLPTVVSLYPAFIAQNSALEGARLSGDLSKSATHMQSRTGPSHGIRQYLNSNSRLVTQMASKLTGIGLFDATPQMRIFSEMDTADYADMLHLTIFEGLTDNGPISFLVNGEKLLSDVLVEELTLANI--RIEHHKMPTGARWVAAKRDSALRLTPRSRRECDFNPTMNLKAAGPKARLRGSRRRVSFRSPPRRESPQLTRRVPIIDEPPAYESGRSSPVTSSISEGTSGLFDAEELPMQQTVIATEARRRLGRGTLERIQEAALAQGEVTAEKNRRIE------AMLSARDPQFTGREQITKMLSDGGLREREEWLELVDKTLKEVRSIDGIRRHLEEYGEREGFAVV |
5 | 5vjsA | 0.15 | 0.03 | 1.17 | 0.42 | CNFpred | | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QQLAQEFQQLLQEIQQLGRELLKGEGIKQLREASEKARNPEKKS------VLQKILEDEEK------HIELLETLQQTGQEAQQLLQELQQTGQELWQLGGSGGPELRQKHQQL |
6 | 6bq1A2 | 0.05 | 0.03 | 1.57 | 0.67 | DEthreader | | GGGGGGGGGGG--------------------KVFDAFLMMADKAK----E--LERHAQFLLVNFNA-L---V-KFPH---------------------T-YDIPDAPYRCILAMAPTV-KS-------LNKLATSILKYFMASLLRFTAMLCGPMFNEHGMETA-LACWEWLAGKVEFMMAGWHMVEQ-----------FLVQRFEIAK------PFKLPQGEKR---------EDISIMIFWLLEAWSISPAEVTRLVR----------EAIKFLVTWH-DAPELS-----HVLCWA-----------HPLTAQYGVKVLSFALFNIFQVGLDLFVFPYITSRMYFTQYGDESTLAFAKGHIIHIDFFMFDIKLTGKMEAT--------EMCVRGYLAVRPYMAVVLVMLPCFRGQTKLLKHFSP--------- |
7 | 1vt4I | 0.12 | 0.12 | 4.15 | 1.63 | MapAlign | | -----GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG |
8 | 6pbcA | 0.10 | 0.10 | 3.57 | 0.71 | MUSTER | | EDPVNHEWYPHYFVLTSSKIYYSEETLHSSEKWFHGKLGAGRGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQPKFFLTDNLVFDSLYDLITHYQQVPLRFEMRLSEPVPQTNAHESKEWYHALTRAQAEHMLMRVPRDGAFLVRKRNEPNSYAISFRAEGKIKHCRVQQEGQTVMLGNSEFDSLVDLISYYEKHPLYRKMKLRYPINEEALEKIGTFKCAVKALFDYKAQREDELTFT-----KSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEMINPAILEPEREHLDENSPLG--DLLRGVLDVPACQIAIRPEGK-----NNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQTK---LELSEL---CRPVPFDEEKIGTERACEKYVNKAKGKKF |
9 | 5g0iA | 0.18 | 0.16 | 5.08 | 0.60 | HHsearch | | ---------SKATGTGL---VYVDAFRFHC-LWDA-SHPECPAR--VSTVMEMLEETLAEKYDSVYLHPGFFSLSVGSVLQLVDKVM-TSQ--------LRNGFSINRPPGHHAQCRHRVQRWDVHHGQGIEEDPSVLYFSVHRYEDGSFWPHLKES-------DSSSVGSAGQGYNINLPWNKV----GMESGDYIFQQLLLPVAYVLVAAGF-------DAVIGDP-----KGGMQSPECFSILTH---MLKGVAQGRLVLALEGGYNLQSTAEGVC--ASMRSLLGDPC--PHLPSSGAPCESSDLYPFWKSLQTFE-PITGLVYDQRMMLHHNMWD-SHHPELPQRISRELSRCHR-----IPARLATEEELALCHSKHIEPRDLNRLGDEYNESYTCALLAAGSCFNSAQAILTGQVRNAVAIVEKDTAC |
10 | 4pk1A | 0.08 | 0.06 | 2.41 | 0.69 | CEthreader | | FTPTTAWSTSVGSGIGNFYSNLHPALADNVVYAADRAGLVKALNADDGKEIWSVSLAEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAQRISSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSITR--------------------------------------------------------------------------------------------------------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|