Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460
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| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AMETSPTIIYQDVSSESQSATSTIKALLELQQTTVKEKLESKPRQPTIDLSQMAVPIQMTQEKRHSPESPSIAVVESELVAEYITTERTDEGTEVAFPLLVSHRSQPQQPSQPQRTLLQHVAQSQTATQTSVVVKSIPASSPGAITHIMQQALSSHTAFTKHSEELGTEEGEVEEMDTLDPQTGLFYRSALTQSQSAKQQKLSQPPLEQTQLQVKTLQCFQTKQKQTIHLQADQLQHKLPQMPQLSIRHQKLTPLQQEQAQPKPDVQHTQHPMVAKDRQLPTLMAQPPQTVVQVLAVKTTQQLPKLQQAPNQPKIYVQPQTPQSQMSLPASSEKQTASQVEQPIITQGSSVTKITFEGRQPPTVTKITGGSSVPKLTSPVTSISPIQASEKTAVSDILKMSLMEAQIDTNVEHMIVDPPKKALATSMLTGEAGSLPSTHMVVAGMANSTPQQQKCRESCSSPSTVGSSLTTR |
1 | 1zvoC | 0.08 | 0.08 | 2.99 | 1.13 | SPARKS-K | | VKPSETLSLTCIVSGGPIRRTYYW--------GWIRQPPGKGL--------EWIGGVYYTGSIYYNPSLRGRVTISVDTNQFSLNLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVVHVSSAPTKAPDVFPIISGCRHPPVVLITGYHPTSVTVYMGTQSQPQRTFPEIQRRDSYYMTSSQLYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVGSDLKDAHLTVPTGGVEEGLLERHSNSQSQHSRLTLPRSLWNAGTSVTCTL-----------NHPSLPPQRLMALREPAPVKLSLNLLASSDPPEAASWL--LCEVSGFSPPNILLMWLEDQREVNTPARPPPQPGSTTFWAWSVLRVPAPPSPLLNASRSLEVSYVTDHGPM-- |
2 | 1kv9A1 | 0.05 | 0.05 | 2.15 | 1.13 | MapAlign | | TSMSWSRVIAVDAASGKELWRYDPYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGD----------------------------------------------------SWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV |
3 | 4aahA | 0.07 | 0.06 | 2.60 | 0.67 | CEthreader | | ---------------------------DADLDKQVNTAGAWPIATGGYYSQHNSPLAQINKSNVKNVKAAWSFSTGVLNGHEGAPLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTK |
4 | 3ea5B | 0.08 | 0.08 | 3.14 | 0.72 | EigenThreader | | FIKNNMEREATQAEDIEVQAAAFGCLCKIMSKYYTFMQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYAISTFVMDKLGQTMSVDENQLLQSNILTVLAAVIRKSPSSVKDSAFIEDDVFYAISALAASLGKGFE------KYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMM-----------NVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGL |
5 | 3cnfB | 0.09 | 0.08 | 2.93 | 0.58 | FFAS-3D | | AIAANPRASYTNQRGTVTNEFASFRTIERAVQDDMQKATRSCTKQWLRHLETHTDHLSVVYATMSNFMLNFTNNFATHVAVVLYQSGVINGPASTYLRENEVLVVMPDYYDVVSRFANANLQMNNNRYHESVLEIAMPTLSTSQIRHAIERIAQITDVDSTDYGKLTLRFLGTLTRSLQNAQI----RRIRPDGTVLRYDDQIDIEAFRWSRYFLDELQLRRLSVGLRLITNPRIARRFNGVRIMYLTDDDPDP-DFVPDVPEGYVAVQYAHRLFSSSLANKRNRVTYTHPPTGMAYPSPTGRPHVHMTINERAGMSKLVADNIIAEVMTPSEGYTQHVDAESIMTAPKKLFHLQF---MDGLLRPEASGEDMRLIYPLQPISVAVNHNEVDR----------PREMDTGT------------------------LSRNGDLLYSPVANGQ--------------------- |
6 | 5kcs1w | 0.10 | 0.09 | 3.34 | 1.10 | SPARKS-K | | VLDGAILL----ISAKDGVQAQTRILFHALRKMGI-------PTIFFIDIDLSTVYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSG--KSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYSSTHRGPSELCGNVFKIEY----TKKRQRYIRLVRVSEKEKIKVTETSINGELCKIDRAYSSVLGDTKLLPQRKKIENPHPQTTVEPSKPEQREMLLEISDSDPLLRYYVDSTTHEIILSKYHVEIEITEPTVIYMERPLKNAEYTIHIEVP-PNPFWASIGLSVSPL----PLGSGMQYESSVSLGYLNQS-------FGIRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTP-ADFRMLAPIVLEQVLKKAGTEPYKIYAPQEYNDAPKYCANIVDTQLKNNEVILSGEVCLTELKGYHVTTGEPVCQPRRPNS |
7 | 5vjhA | 0.20 | 0.05 | 1.49 | 0.35 | CNFpred | | ------VLLFDEVEKAHPDVLTVMLQMLDDGRITSGQ-------GKTIDCSNCIVIMTSNL------------------GAEFINSQQGSKIQESTKNLVMGAVRQHFRPEFLNR-------------SSIVIFNKL---SRKAIHKIVDIRLKEI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
8 | 6rw8A | 0.06 | 0.03 | 1.49 | 0.50 | DEthreader | | ----------------QESKQNKLEELRILSTLNNSYN---SWFYGRAH--F--------------------------GSIA----------------A-YLTLYREAKFHYHLNKRRPDIASL-ALT-NNMEEISTLSLN-ESRQAILLDKNLTAFSRTAEMDPTSLLAIKTD----------------ISPELYQILVEIDSNV-------------------------------------------------PYVNTKIALFSDT-LT-----------EA-QVSAQVKTTYSAGELYPENYI--------------------VANLQVISGYHYLIGYSQ----------INVENIRMVYGTENDLDAIVKTL-ELDTRT------------GLSRKLAERANVLSMTQNLPEQLGFYATF-LPH-RWFKIHIGNINSARQYDKWESAYKGFIHVVV----------- |
9 | 1w7cA | 0.06 | 0.05 | 2.30 | 1.13 | MapAlign | | -----------------LAKEEVQEVLDLLHSTYNI-----------------------TEVTKADFFSNYVLWIETLKPNKTEALTYLDEDGDLPPRNARTVVYFGEGEEGYFEELKVPLSFYNTNGKSKLPFEVGHLDRIKSAAKSSFLNKNLDVLEGLIGVPYEDMGCHSAAPQLHDPATGATVDYGTCNIN---------------------TENDAENLVPTGFFFKFDMTGRDVSQWKMLEYIYNNKVYTSAEELYEAMQKDDFVTLPKIDVDNLDWTVIQRNDSAPVRHLDDRKSPRLVEPEGRRWAYDGDEEYFSWMDWGFYTSWSRDTGISFYDITFKGERIVYELSLQELIAEYGSDDPFNQTAGYFTTDTFEYDEFYNRTLSYCVFENQEDYSLLRHTGASYSAITQNPTLNVRFISTIGNDYNFLYKFFLDGTLEVSVRAAGYIQAGYWGLKIHDVLSGS |
10 | 1zlgA | 0.10 | 0.10 | 3.64 | 0.96 | MUSTER | | HTCQVPKTLYKGVPLKPRKE-------------RFTELQSSSKFNISIEPVIYVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHFWSWMVSSKSLVPTKKKRRKTTDGFQNSVEKLQPDCDYVVEQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQKKTEDPTVNPEACAHNRTTGSEASSGMTHENYIILQKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVTWAEVTTESRQNSLPNSIISQS-----------QILPSDHYVLTVPNLRPSTLVLTPGGEGPATIKTFRTPELPPSSAHRSHLKHRHPSPERYGKPIPNP |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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