Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Download alignment | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| SS Seq | CCCCCHHHHCCCCCCCCCCCCCCCHCHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCSSSSCCCCCCCCC MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTKLGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEGSDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEISDPEEDDK |
1 | 1vt4I3 | 0.06 | 0.06 | 2.58 | 0.62 | CEthreader | | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG |
2 | 6zydE | 0.04 | 0.04 | 1.91 | 0.52 | EigenThreader | | --GGGGGGGGGGGGGGGGGGGGGGGGGG------------GG---GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGDFICTSLIAVLLINQFEKQQIKKGRDITSARIMSRIIKITIIVVLVLLYGEHFGMSLSGLLTFGGIGGLAVGMAGKDILSNFFSGIMLYFDWRNSLFSSISVEN |
3 | 1v65A | 0.30 | 0.07 | 2.10 | 0.45 | FFAS-3D | | ------------------------YDDVHMNFTEEEWDLLDSSQKRLYEEMLETYQNLTDIGYNWQDH------------------------------------------------------------------------------------------------------------------------ |
4 | 3jc8Na | 0.06 | 0.05 | 2.36 | 0.90 | SPARKS-K | | VANYLWYDDRQSELEAHQAGVASTKARIAELEKIGEVKNINTRKAEVEKKLAVLDALRKGRSGPVRMMDALASATPKKVWVKTFSENNNAAVSHDEVAEFMRGLNGVVWTPKGMGRLVDRRRDSKTARVEMLTSDATIEEFPEAQVSPFAKQVGGAQVGVPILVEFKITMTSNY-------------- |
5 | 3v0cA | 0.21 | 0.05 | 1.52 | 0.46 | CNFpred | | -------------------KRNEKWDEVYKYIVTNWLAKVNTQIDLIRKKMKEALENQAEAT------------------------------------------------------------------------------------------------------------------------------ |
6 | 6l7eA | 0.04 | 0.03 | 1.67 | 0.83 | DEthreader | | -------TLT-PEIKNTYATLQEVAHSVLLWADKLQPGAMHIVQYCQALAQLEMVYHST---GINAFR-FVTKPEMGCWTSINTILQWVAQQLVVLAALDSRSAALSTYLLLSLVNWDKYKRT-G-YIDPTQMRLDLLI---E-MWYMLRVYNLNLQPLYLPIYATPADP------------------ |
7 | 1h09A | 0.05 | 0.05 | 2.44 | 0.87 | MapAlign | | GGDVAEAEREAQFFLDAQANTNACLRFMQMYSYKPFTHDVDYQQILAQFPNSLWIRWWQVLLDDEEDDKPKTAGTWKQDSKGWWFRRNNGSFPYNKWEKIGGVWYYFDSKGYCLTSEWLKDNEKWYYLKDNGAMATGWVLVGSEWYYMDDAMVTGWVKYKNNWYYMTNERGNMVSNEFIKSGKGWYFM |
8 | 2mxxA | 0.17 | 0.14 | 4.73 | 0.64 | MUSTER | | MADEATDAARNNDGAYYLQTQFTNADKVNEYLAVAAKAALDAVEGGNYGEVKAAYEAAFNNAFNAVRNKYVQRFQAT--YNNATEQEGKTYIQGETPEQANARYLKRVGAANNQNPAAEDKGATTPASKEEAKKSEAAAKNAGKAAGKALPKTSAVKHHHHHH------------------------- |
9 | 1v65A | 0.22 | 0.07 | 2.35 | 1.68 | HHsearch | | ---------------GSSGSSGVTYDDVHMNFTEEEWDLLDSSQKRLYEEMLETYQNLTDIGYNWQDHHIEESGPSSG-------------------------------------------------------------------------------------------------------------- |
10 | 6su8A | 0.08 | 0.08 | 3.15 | 0.62 | CEthreader | | DAQCGVQPFINGTVNTGSLGACCNEMDIWEANALATALTPHPCSVTSIYACSGAECGSNGVCDKPGCGYNPYALGDHNYYGPGKTVDTSRPFTVVTQFLTNDNTTTGTLTEIRRLYVQDGNVIGPSPSDSVSSITDSFCSTVDSYFEPLGGLKEMGNDPGQFMNWLDSGNAGPCNSTEGNPATIEAQH |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|