Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320
| | | | | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCSSSSSSSSSCCCSSSSSSCCCCCCCCSSSSSSSSSCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCSSSSSSSSSCCCCCSSSSSSSSSCCCCCSHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSSSSSSCCCCSSSSSSCCCCSSSSSSSSCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCSSSSSSSSSCCCCSSSSSSSCCCCHHHHHHHHCCSSSSSSCCCCCCCHHHHHHHHHHHHHHHCCCCCC MASSAQSGGSSGGPAVPTVQRGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQGREYGMIYLGKDTNGENIAESLVAEGLATRREGMRANNPEQNRLSECEEQAKAAKKGMWSEGNGSHTIRDLKYTIENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTVMLSGIKCPTFRREADGSETPEPFAAEAKFFTESRLLQRDVQIILESCHNQNILGTILHPNGNITELLLKEGFARCVDWSIAVYTRGAEKLRAAERFAKERRLRIWR |
1 | 4qmgA | 0.98 | 0.88 | 24.76 | 1.33 | DEthreader | | ---------------P-TVQRGIIK-VLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRA------AKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQGREYG-IYLGKDTNGENIAESLVAEGLATRREG-RANNPEQNRLSECEEQAKAAKK-GWSEGNGSHTIRDLKYTIENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTV-LSGIKCPTFR-R----T-PEPFAAEAKFFTESRLLQRDVQIILESCHNQNILGTILHPNGNITELLLKEGFARCVDWSIAVYTRGAEKLRAAERFAKERRLRIWD |
2 | 4qmgA | 0.96 | 0.88 | 24.78 | 4.08 | SPARKS-K | | -----------------PTVQRGIIKVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQGREYG-IYLGKDTNGENIAESLVAEGLATRREGRA-NNPEQNRLSECEEQAKAAKKG-WSEGNGSHTIRDLKYTIENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTV-LSGIKCPTFRRT------PEPFAAEAKFFTESRLLQRDVQIILESCHNQNILGTILHPNGNITELLLKEGFARCVDWSIAVYTRGAEKLRAAERFAKERRLRIWR |
3 | 4qmgA | 0.98 | 0.90 | 25.28 | 2.03 | MapAlign | | ----------------PTVQRGIIK-VLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQGREYG-IYLGKDTNGENIAESLVAEGLATRR-EGRANNPEQNRLSECEEQAKAAKK-GWSEGNGSHTIRDLKYTIENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTV-LSGIKCPTF------RRTPEPFAAEAKFFTESRLLQRDVQIILESCHNQNILGTILHPNGNITELLLKEGFARCVDWSIAVYTRGAEKLRAAERFAKERRLRIWR |
4 | 4qmgA | 0.97 | 0.89 | 24.94 | 1.46 | CEthreader | | -----------------PTVQRGIIKVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQGREYG-IYLGKDTNGENIAESLVAEGLATRRE-GRANNPEQNRLSECEEQAKAAKKG-WSEGNGSHTIRDLKYTIENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTV-LSGIKCPTFRR------TPEPFAAEAKFFTESRLLQRDVQIILESCHNQNILGTILHPNGNITELLLKEGFARCVDWSIAVYTRGAEKLRAAERFAKERRLRIWR |
5 | 4qmgA | 0.97 | 0.88 | 24.78 | 2.46 | MUSTER | | -----------------PTVQRGIIKVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQGREYG--YLGKDTNGENIAESLVAEGLATRREG-RANNPEQNRLSECEEQAKAAKKG-WSEGNGSHTIRDLKYTIENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTVL-SGIKCPTFRRT------PEPFAAEAKFFTESRLLQRDVQIILESCHNQNILGTILHPNGNITELLLKEGFARCVDWSIAVYTRGAEKLRAAERFAKERRLRIWR |
6 | 4qmgA | 0.99 | 0.91 | 25.44 | 5.70 | HHsearch | | ----------------PTVQR-GIIKVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQGREYG-IYLGKDTNGENIAESLVAEGLATRREG-RANNPEQNRLSECEEQAKAAKKG-WSEGNGSHTIRDLKYTIENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTV-LSGIKCPTFRR------TPEPFAAEAKFFTESRLLQRDVQIILESCHNQNILGTILHPNGNITELLLKEGFARCVDWSIAVYTRGAEKLRAAERFAKERRLRIWR |
7 | 4qmgA | 0.94 | 0.86 | 24.11 | 3.24 | FFAS-3D | | -------------------VQRGIIKVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQGREYG-IYLGKDTNGENIAESLVAEGLATRREG-RANNPEQNRLSECEEQAKAAKKGWSEGNGS-HTIRDLKYTIENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTV-LSGIKCP------TFRRTPEPFAAEAKFFTESRLLQRDVQIILESCHNQNILGTILHPNGNITELLLKEGFARCVDWSIAVYTRGAEKLRAAERFAKERRLRIWR |
8 | 4qmgA | 0.91 | 0.83 | 23.29 | 1.88 | EigenThreader | | ----------------PTVQRGIIKVLS-GCAIIVRGQPRGGPPPERQINLSIRAGNLARRAAA-TQPDAKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQGRE-YGIYLGKDTNGENIAESLVAEGLATRREGRANN-PEQNRLSECEEQAKAAKKGWSEGNGSHTIR-DLKYTIENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTV-LSGIKCPTFRR------TPEPFAAEAKFFTESRLLQRDVQIILESCHNQNILGTILHPNGNITELLLKEGFARCVDWSIAVYTRGAEKLRAAERFAKERRLRIWR |
9 | 4qmgA | 1.00 | 0.93 | 26.12 | 4.17 | CNFpred | | ----------------PTVQRGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQGREYGMIYLGKDTNGENIAESLVAEGLATRREGMRANNPEQNRLSECEEQAKAAKKGMWSEGNGSHTIRDLKYTIENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTVMLSGIKCPTFRR------TPEPFAAEAKFFTESRLLQRDVQIILESCHNQNILGTILHPNGNITELLLKEGFARCVDWSIAVYTRGAEKLRAAERFAKERRLRIWR |
10 | 3bdlA | 0.28 | 0.26 | 7.85 | 1.33 | DEthreader | | --------------M-DKQFVAKVMQVLNADAIVVKLNS----GDYKTIHLSSIRPPRLTQDKNK----KLRPLYDPYMFEAREFLRKKLIGKKVNVTVDYIRPAERTCATVTIG---G-INIAEALVSKGLATVIRYRDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADISDTQKAKQFLPFLQRGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGARNLGLVQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGFIGWLHIDGANLSVLLVEHALSKVHF-TAER-SSYYKSLLSAEEAAKQKKEKVWA |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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