Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540
| | | | | | | | | | | | | | | | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GVVPPPPPPPPPPTPGSAMAQLKPAPCAPSLPQFSAPPPPLKIHQVQHITQVAPPTPPPPPPIPAPLPPQAPPKPLVTIPAPTSTKTVAPVVTQAAPPTPTPPVPPAKKQPAFPASYIPPSPPTPPVPVPPPTLPKQQSFCAKPPPSPLSPVPSVVKQIASQFPPPPTPPAMESQPLKPVPANVAPQSPPAVKAKPKWQPSSIPVPSPDFPPPPPESSLVFPPPPPSPVPAPPPPPPPTASPTPDKSGSPGKKTSKTSSPGGKKPPPTPQRNSSIKSSSGAEHPEPKRPSVDSLVSKFTPPAESGSPSKETLPPPAAPPKPGKLNLSGVNLPGVLQQGCVSAKAPVLSGRGKDSVVEFPSPPSDSDFPPPPPETELPLPPIEIPAVFSGNTSPKVAVVNPQPQQWSKMSVKKAPPPTRPKRNDSTRLTQAEISEQPTMATVVPQVPTSPKSSLSVQPGFLADLNRTLQRKSITRHGSLSSRMSRAEPTATMDDMALPPPPPELLSDQQKAGYGGSHISGYATLRRGPPPAPPKRDQNTKLSRDW |
1 | 2nbiA | 0.18 | 0.14 | 4.61 | 1.92 | SPARKS-K | | SDASRPPSCLSFGRPDCDVLPCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCLPTSDPARPPDCTAVGRPVLPFPPFECSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPSQCAEVIEQCP-----------IDECFLPYGDSSRPLDCTDPAVNRPDCDVLPTPINCPACCACRPDNPMFTPSPGSPPICSPTMMPSPEPSSQPSDCGEVIEECPIDACFLPKSDSARPPDCTAVGRPDCNVLPFPNNIGCPSCCPFFTPSPDGSPPNCSPTMLPSPSP-------SAVTVPLTPAPSSAPTRQPSSQPTGPQPS----SQPSECDVLELCPYDTCFLP-------FDDSSRPP----DCTDPSVNRPDCDKLSTAIDFTCPTCCPTQCRPDNPMFSPSPDGSPPVCSP----TMMPSPLPSPTE------------------------------------------------------------------------------- |
2 | 1vt4I3 | 0.05 | 0.05 | 2.31 | 1.18 | MapAlign | | -------RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG |
3 | 2nbiA | 0.15 | 0.13 | 4.47 | 1.41 | MUSTER | | --QPSDLNPSSQPSECA---VLEECPIDECFLPYSDASRPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAVGRPDCDVLPFPNNLGCPACCPFECSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPSQCAEVIEQCPIDECFLPYGDSSRPLDCTDPAVNRPLPTPQNINCPAC-CAFECRPDNPMFTPSPDGSPPICSPTMMPSPEPSSQPSD------CGEVIEECPIDACFLPKSDSARP--PDCTAVGRPDC-NVLPFPNNIGCPSCCPFECSPDNPMFTPSPDGSPPNCSPTMLPSPSPSAVTVPLTPAP-------SSAPTRQPSSQPTGPQPSSQPSECADVLELCPYDTCFLPFDDSSRPPDCTDPSVNRPD------------CDKLSTAIDFTCPTCCPTQCRPDNPMFSPSP-----DGSPPVCSPTMM--------PSPLPSPTE--------- |
4 | 1vt4I3 | 0.05 | 0.05 | 2.23 | 0.84 | CEthreader | | GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG------- |
5 | 5tsjN | 0.07 | 0.06 | 2.33 | 0.70 | EigenThreader | | PEALSAYQLSPEERAELRRWEAVSAGAEHTLSLLGLEAEPARPFPEGLEAAEKALSPIQAHAEGLTRQKQELEEELALAQAYLEPLERLAALAHGLDKSPFT----------------------------------------------------EKELPLVEEALRKALEDRYAYAGGVKEVDQAKAALSRAGVAELRLPGALGELPLSEAARRLKERAEAAPRELSEVRQHLAKLARESA-----STLQSLWTRAQDEVARLKALEELASGRFGVKAKPKVEEANPPWVKPFELLVSFLNTPKYGTFDPTPVVPIFFPFWFGMIVGDIGYALLFYLVGRWLSGYVKRNEPLVIDLFALKLKPPVLAKLVYILNWMVFWTVVWGLIYGEFFGT--------------------------FLEHLGVFGT---PEHPGLIPILIHRIDTAKTANLLILLSVAFGVVMVFAGLILRAYLGLKHRHMAHFWEGVGYLGGLLGILALAASYLGNLQAGWLSALMYLGFGVFLLSVVMSSIWLMIPEIF |
6 | 5kcs1w | 0.08 | 0.08 | 2.98 | 0.69 | FFAS-3D | | GAITELGSVDK----GTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAESAKDGVQAQTIPTIFNKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEAKSNIGIDNLIEVITNKFYSSTHRGPSEEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKEKIKVTE------MYTSINGELCKIDRAYSGEIVILQNEFLKLNSVLGDTKLLPQRKKIENPHPL--LQTTVEPSKPEQRE-----MLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVIKYHVEIEITEPTVIYMERPLKNAEYTIHIEVPPNP-----FWASIGLSVSPLPLGSSVSLGYLNQSFQLYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYLSFKIYAPQEYLSRAYNDAPK----YCANIVDTQLKNNPARCIQEYR-----SDLTFFTNGRSVCLTELKGYHVT-TGEPVCQPRRPNSRIDKVRY |
7 | 5jcss | 0.09 | 0.09 | 3.47 | 1.77 | SPARKS-K | | WVLIEDIDKAPTDVLSILLSLLEKRELTIPSRGETVKAANVRINEDHQKDSSNKIYNLNMIGMRIWNVIELEEPSEEDLTHILAQKILTNLIPKLIDYMNTKFISLNKGAHTRVVSVILFKNNGINKPDQLIQSSVYDSIFSAGAIGEFKALEPIIQAIGESL---DIASSRISLFLTQHVPTLENLDDSIKILKEKLNIQKKSMNSTLFAFTNHSLRLVCIQMTEPVGETGTGKTTAKMLAKKLTVINVSQQTETGDLLGGYKPKTVAVPHKMLHRCFNKNQWKNVVKLWNEAYKMAQSILKITNTENENENAKKKKRRLNTHEKKLLLDKWADFNDSVKKFEAQSSSIENSFVFNFEGSLVKTDEVNLATADDLLTEPDSRSILLSEKGDAEPIKAHPDFRIFPATDVKRDLPMGIRSRF-TEIYVHSPERDITDLLSIIDKYIGKYSVSDEWVGNDIAELYLEAKKLSDNNTIVDGSNQKPHFSIRTLTRTHIYGLRRSLYDGFCMSFLTLLDQKSEAILKRLKNVKSIMSYIITPFVEKN |
8 | 5d06A | 0.06 | 0.04 | 1.61 | 0.67 | DEthreader | | ---------PAGSPVTRD---------------------HEDDHIDLD-------V-PILSVNDI-MQSVVSKW---------------ASKKYNMIHVLIREAMQAWSEEELSR-----------LVHRHGGLVAFCSKTLLNNM-REEIASEAVDIEDSEMHV--------------------------TFHRTNAKNGKG-------LSQTKETSITQQLGILIHVDVVNRLDYDKEVIQVSMTRCWGVFLRLLREEAKEHLAFKTGRNIPYDDPKAFSYSST--I--EILNRHAGGIK---------NVEVNVDW--GL-------------------------------------------GLLKSC-LRFVL-LS---------GKFKYTE------------NDLLQENFERCFYVPKNKE--DDN--K--F-EI-DATIINKDLYDYFLFTPDYAAGAIELA-------------------DQVLRGPGMRTLDYRPYYNNGEDKGNYPEWVCYGILYSRLLKHETNKDGEVCSSP |
9 | 4geyA | 0.04 | 0.03 | 1.60 | 1.13 | MapAlign | | --------------------------------------------------------------------------------EAFSSESKWTGDWGGTRTELLDKGYDFTLDYVGEVAGNLHGGYNDDKTARYSDQFALGAHLDLQKILGWHDAEFKLAITERSGRNLSNDRISDPRAGQFSSVQEVWGQTWRLTQWIKQKYFDGALDVKFGRFGEGEDFNSFPCDFQNLAFCGSQVGNWVGGIWYNWPVSQWALRVKYNITPAFFVQVGAFEQNPSNLETGNGFK---LSGSGTKGAIPEAVWSPKVNGLPGEYRLGYYY-------------STAKADDVYDDVNGNPQALTGEAFKSHS---------SKHGWWVVAQQQVTAHGGDVNRGLSLFAN-----------------FTVHDKATNVVDNYQQVGLVYKGAFDARPKDDIGFGVARIHVNDDVKKRAELLNAQSGIND--------YDNPGFVPLQRTEYNAELYYGFHVTNWLTVRPNLQYIKSPGGVDEVDNALVAGLKIQS-- |
10 | 3chnS | 0.09 | 0.08 | 3.11 | 1.16 | MUSTER | | ---KSPGPEEVNSVEGN--VSITPPTSVNRHTRKY-QGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVAQLSQGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTPFKTENAQKRQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSGDDSNSNKKNADLQVLKPEPELVYEDLHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRHSDGQLQEGSPIQAWQLFVNEESTIPRSPT-----VVKGVAGSSVAPYNRKESKSIKYWCLAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTQLTSRDA--GDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRL--VSLTLNL--------------VTRADEKQGHFYGETAAVYVAVEERKAAGSRDVSAKADAAPDEKVLDSGFREIENKAIQDPR----------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|