Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200
| | | | | | | | | | |
| SS Seq | CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCSSSSSSSSCCCCSSSSSSCCCCCHHHHHHHHHHHHCCCCCCCSSSSSSCCCCCCCCCCCCHHHHHHHHHHCCCCCCCSSSSSSCHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCSSCSSSSSCCCCCCCCSSSSSSSCCCCCSSCCCCCCCCCCCCCCCCCCCCCCCCCCCC QGQPITEEEQAAKLKAEKIRVALEKIKEAQVKKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIFMERIEKYALFKNPQNYLLGKKETAEMADRNKEVLLEECFCGSSVTVPEIEGVLWLKDDGMNRPYTSLVPPLSPQPKIVTPYTASQPSPPLPPPPPPPPPPPPPPPP |
1 | 4gmvA | 0.68 | 0.46 | 13.00 | 0.83 | DEthreader | | -------A--KI--AL-KI--KEAQV----K-KLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIFMERIEKYALFKNPQNYGKKET---------VPEIELLRASGIYL--VYYG-QD--------------TDYCLYLCC------------------A-KR-------- |
2 | 4gmvA | 0.78 | 0.73 | 20.66 | 2.21 | SPARKS-K | | --------------KAEKIRVALEKIKEAQVKKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIFMERIEKYALFKNPQNYLLGKKETAEMADRNKEVLLEECFCGSSVTVPEIEGVLWLKDDGKKSWKKRYFLLRASGNVYYGQDYRNKYKAPTDYCLVLKHPQIQKKSQ |
3 | 5ejqA | 0.12 | 0.11 | 3.73 | 0.89 | MapAlign | | --SDVSKSVKDSAQASYFILQRFTLNRKQVPEPIFVRITATDGSLKGLHIDSATTCQESSNDLSQRSRMNSENGFTIIESFNG--IERDIAPTDKLCDVLSKVKIQVNFKFVFKKKQLFNDLIGSLKLQFNKYKSHKGLSPEDAKKQMVQLL-EKHPLANCSLVVCEHQSESLPYPKNFVLALNVNGINIYDPATSKMLE------------------- |
4 | 3tcaA | 0.47 | 0.39 | 11.31 | 0.59 | CEthreader | | ------------------------------VKKLVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDWCLYEIYPELQIERVFEDHENVVEVLSDWTRDTENKVLFLEKEERYAVFKNPQNFYL-------MNAKNKEYLLEESFCGTSIIVPELEGALYLKEDGKKSWKRRYFLLRASGIYYVPKGKTKTSRDLACFIQFENVNIYYGIQC |
5 | 4gmvA | 0.79 | 0.73 | 20.65 | 1.88 | MUSTER | | --------------KAEKIRVALEKIKEAQVKKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIFMERIEKYALFKNPQNYLLGKKETAEMADRNKEVLLEECFCGSSVTVPEIEGVLWLKDDGKKSWKKRYFLLRASG-IYYVDLVCQDYRNKYKAPTD--HPQIQKKSQ |
6 | 4gmvA | 0.80 | 0.74 | 20.77 | 4.36 | HHsearch | | --------------KAEKIRVALEKIKEAQVKKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIFMERIEKYALFKNPQNYLLGKKETAEMADRNKEVLLEECFCGSSVTVPEIEGVLWLKDDGKKSWKKRYFLLRASGIYYV--DLVCF--LQLDHYGQDYRNKYKAPTD |
7 | 4gmvA | 0.82 | 0.73 | 20.48 | 1.98 | FFAS-3D | | --------------KAEKIRVALEKIKEAQVKKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIFMERIEKYALFKNPQNYLLGKKETAEMADRNKEVLLEECFCGSSVTVPEIEGVLWLKDD-GKKSWKKRYFLLRASGIYYVDLVCQDYRNKYKAPTD----------- |
8 | 4gmvA | 0.54 | 0.48 | 13.96 | 1.02 | EigenThreader | | ---KAEKIRVALEKIKE-----------AQVKKLVIRVHMDDSSKTMMVDE-RQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIFMERIEKYALFKNP--QNYLLGKKE----TAEEVLLEECFCGSSTVPEIEGVLWLKD--DGKKSWKKRYFLLRASGIYYVDDHVDYRNKYKAPTDYPQIQKKSQYIK |
9 | 4gmvA | 0.90 | 0.73 | 20.41 | 2.68 | CNFpred | | --------------KAEKIRVALEKIKEAQVKKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIFMERIEKYALFKNPQNYLLGKKETAEMADRNKEVLLEECFCGSSVTVPEIEGVLWLKDDGKKSWKKRYFLLRASGIYYV---------------------------- |
10 | 4k81A | 0.27 | 0.17 | 5.34 | 0.83 | DEthreader | | ------------------------------K-KQVIKVYSEDETSRALDVPSDITARDVCQLLILKNHYIDDHSWTLFEHLPHIGVERTIEDHELVIEVLSNWGIEEENKLYFRKNYAKYEFFKNPMYFFPEH-----FISPQILQMFYPIRRSGLEF-I-VS--LAGK-----------NYGFCLCAEEE-------------------YQG------ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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