Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCSSSCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCSCCCCCCCCCCCSSSSSSCCCHHHHHHHHHHHHHSCCCCCCCSSSSSSSSSCCCCCCCCSSSSSSSCCSSSSSSSCCCCCCSSSSSSSCHHHCSSSSSSSSSCCCCCCCCCCCCSSSSSSCCCCCCCHHHCCCCCCCCCCSHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCSSSSSCCSSSSSSCCHHHHHCCCCCCCSSSSCCCCCC MSTIGSFEGFQAVSLKQEGDDQPSETDHLSMEEEDPMPRQISRQSSVTESTLYPNPYHQPYISRKYFATRPGAIETAMEDLKGHVAETSGETIQGFWLLTKIDHWNNEKERILLVTDKTLLICKYDFIMLSCVQLQRIPLSAVYRICLGKFTFPGMSLDKRQGEGLRIYWGSPEEQSLLSRWNPWSTEVPYATFTEHPMKYTSEKFLEICKLSGFMSKLVPAIQNAHKNSTGSGRGKKLMVLTEPILIETYTGLMSFIGNRNKLGYSLARGSIGF |
1 | 4xuuA | 0.17 | 0.08 | 2.75 | 1.12 | FFAS-3D | | ------------------------------------------------------------------------LISQLLQSYKLLL--PDDEKFHGGWALIDIDATHRDVDVLLLLSNSAYYVAYYDDEVDKVNQYQRLSLENLEKIEIG----PEPTLFGKPKFSCRLHYRYKEASGYFHTLRAVRNPEE--------------------DGKDTLQCIAELQITKQAGSDLP------------------------------------------ |
2 | 4xuuA | 0.15 | 0.09 | 2.93 | 1.00 | SPARKS-K | | ------------------------------------------------------------------SRSHQELISQLLQSYKLLLP--DDEKFHGGWALIDCDPTHRDVDVLLLLSNSAYYVAYYDDEVDKVNQYQRLSLENLEKIEIGPEP----TLFGKPKFSCRLHYRYKEASGYFHTLRAVRN----------PEEDGKDTLQCIAELQITKQAGSDLPIIEKKLEAKASKPHEDII---------------------------------- |
3 | 4xuuA | 0.15 | 0.08 | 2.68 | 1.58 | CNFpred | | -----------------------------------------------------------------------ELISQLLQSYMKLLLPD-DEKFHGGWALIDCD-THRDVDVLLLLSNSAYYVAYYDDEVDKVNQYQRLSLENLEKIEIGPEPT---LFGKPKFSCMRLHYRYKEASGYFHTLRAVMR-------------------NPEEDGKDTLQCIAEMLQITKQAM-----GSDLPIIE-------------------------------- |
4 | 4xuuA | 0.16 | 0.09 | 3.03 | 5.74 | HHsearch | | ------------------------------------------------------------------SRSHQELISQLLQSY-KLLLP-DDEKFHGGWALIDCDPTHRDVDVLLLLSNSAYYVAYYDDEVDKVNQYQRLSLENLEKIEIGPEP----TLFGKPKFSCRLHYRYKEASGYFHTLRAV----------RNPEEDGKDTLQCIAE---LQI----TKQA----------GSDLPIIEKKLEAKASKPHEDII----------------- |
5 | 4tyzA | 0.12 | 0.05 | 1.67 | 0.62 | CEthreader | | ---------------------------------------------------------------------------NIEGVFRKSFPDLAGETLLDSFNCAWVE-GSALKQGYLFITPHWLCFQSTLAAAH-----FSIEYDEIKDIIKS-------KSVKMFENAIEVKTHLNDT----------------IFLTNF------------LQRDQAYSALMSQWLK-------------------------------------------------- |
6 | 6kxkA | 0.07 | 0.06 | 2.45 | 0.63 | EigenThreader | | VLNSLAPKWIKKFIVAYHFETVQVYDVDTKFQNSREEMLKLDEQKSTRKRKDGFAPQAQPHEIVFRCSNLESK------------DLFSKSDPFLVVSKIVSKTEVRKNDIIECSDFSLIGKVQEKLHLAGQGINFSLPTLASGFMVAIDFTASNGNPRLPDSLPAWGFGADAP--------------VSHCFNLNGSSSYSEVIQGIMTSYTSALFAAAMIASASLAQ------GSRKYYVL--LIITDTKDALVSASDADKGERLESSSGRLA |
7 | 6l30A3 | 0.12 | 0.06 | 2.17 | 0.42 | FFAS-3D | | ---------------------------------------------------------------------RKTEAQKQIFDVVYEVLLSSHRSLVQRVETISLGPCDRGEQVTLFLFNDCLEIARKRHPPASLKHIHLMPLSQIKKVLD-------IRETEDCHNAFALLVRPPTEQA-------------NVLLSFQMTSDELPK-------ENWLKMLCRHVANTICKADAEN----------------------------------------- |
8 | 4r04A | 0.06 | 0.05 | 2.41 | 0.67 | SPARKS-K | | IDNEVREISIENGTIKKGKIKDVLSKIDINKNKGNQTIDFSGDIDNKDRYIFLTCELDDKIVAKSYSLLLSGDKNYLISNLSNTIEGLDSKNIAYNYTFGAISK--TSQKSIIHYKKNILEFYNFNSKDFIAEDINVFMKDD-INTITGKYYVDNN-----TDKSIDFSISLVSKNQVKVNGLYLNESVYSSYLDFVKNSDGHHNTSNF--MNLFLDNIS--FWKLF-----GFENINFVIDKYFTLVGKTNLGYVEFICDNNKNIDIYFGEWKT |
9 | 4trtA | 0.11 | 0.06 | 2.23 | 0.78 | CNFpred | | ------------------------------------------------------------------VSLDGGELSRAFSSVRYAASNEAFQAVFRGIKLEHHG----ESARVVASDGYRVAIRDFPAS----GKNLIIPARSVDELI-ARFTYGDGMLTVT-TDRVKMNLKLL-----DGDFPDYERVIPKDIKLQVTL-----------PATALKEAVNRVAVLADKNA-----NNRVEFLVSTLRLAAEG----------------------- |
10 | 5yfpB | 0.05 | 0.03 | 1.53 | 0.67 | DEthreader | | FKTNEQCDKNQIESKVVTTFKPLMDNYQILNQATKFLFYFNLTENVTDIWLIRIKMNGFQNELNELSGHM-ISKIIHSQRLIQNNTNQDKSQG----------------------CVELS----------------YYLKINQFQISDTG---------------------TISLNCQ-PSS-----S-GLSRYPVEILSRNTSTIINRCV-GAISSTKLRDISNFYQLENWQVEVTPEVFQVSIT----------------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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