D-I-TASSER Q6ZSZ6-D1

D-I-TASSER results for Q6ZSZ6-D1

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Input Sequence in FASTA format

>Q6ZSZ6 (1022 residues)
MPRRKQQAPRRSAAYVPEEELKAAEIDEEHVEDDGLSLDIQESEYMCNEETEIKEAQSYQ
NSPVSSATNQDAGYGSPFSESSDQLAHFKGSSSREEKEDPQCPDSVSYPQDSLAQIKAVY
ANLFSESCWSSLALDLKKSGSTTSTNDASQKESSAPTPTPPTCPVSTTGPTTSTPSTSCS
SSTSHSSTTSTSSSSGYDWHQAALAKTLQQTSSYGLLPEPSLFSTVQLYRQNNKLYGSVF
TGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNRDKDSEKTKRWSKPRKRSLMEMEGK
EDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVPLKEPVPAITKLVPSTKKRALQDLA
PPCSPEPAGMAAEVALSESAKDQKAANPYVTPNNRYGYQNGASYTWQFEARKAQILKCME
CGSSHDTLQQLTAHMMVTGHFLKVTTSASKKGKQLVLDPVVEEKIQSIPLPPTTHTRLPA
SSIKKQPDSPAGSTTSEEKKEPEKEKPPVAGDAEKIKEESEDSLEKFEPSTLYPYLREED
LDDSPKGGLDILKSLENTVSTAISKAQNGAPSWGGYPSIHAAYQLPGTVKPLPAAVQSVQ
VQPSYAGGVKSLSSAEHNALLHSPGSLTPPPHKSNVSAMEELVEKVTGKVNIKKEERPPE
KEKSSLAKAASPIAKENKDFPKTEEVSGKPQKKGPEAETGKAKKEGPLDVHTPNGTEPLK
AKVTNGCNNLGIIMDHSPEPSFINPLSALQSIMNTHLGKVSKPVSPSLDPLAMLYKISNS
MLDKPVYPATPVKQADAIDRYYYENSDQPIDLTKSKNKPLVSSVADSVASPLRESALMDI
SDMVKNLTGRLTPKSSTPSTVSEKSDADGSSFEEALDELSPVHKRKGRQSNWNPQHLLIL
QAQFASSLRETTEGKYIMSDLGPQERVHISKFTGLSMTTISHWLANVKYQLRRTGGTKFL
KNLDTGHPVFFCNDCASQFRTASTYISHLETHLGFSLKDLSKLPLNQIQEQQNVSKVLTN
KT

Predicted Secondary Structure

Sequence	20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 600 620 640 660 680 700 720 740 760 780 800 820 840 860 880 900 920 940 960 980 1000 1020 \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| MPRRKQQAPRRSAAYVPEEELKAAEIDEEHVEDDGLSLDIQESEYMCNEETEIKEAQSYQNSPVSSATNQDAGYGSPFSESSDQLAHFKGSSSREEKEDPQCPDSVSYPQDSLAQIKAVYANLFSESCWSSLALDLKKSGSTTSTNDASQKESSAPTPTPPTCPVSTTGPTTSTPSTSCSSSTSHSSTTSTSSSSGYDWHQAALAKTLQQTSSYGLLPEPSLFSTVQLYRQNNKLYGSVFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNRDKDSEKTKRWSKPRKRSLMEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVPLKEPVPAITKLVPSTKKRALQDLAPPCSPEPAGMAAEVALSESAKDQKAANPYVTPNNRYGYQNGASYTWQFEARKAQILKCMECGSSHDTLQQLTAHMMVTGHFLKVTTSASKKGKQLVLDPVVEEKIQSIPLPPTTHTRLPASSIKKQPDSPAGSTTSEEKKEPEKEKPPVAGDAEKIKEESEDSLEKFEPSTLYPYLREEDLDDSPKGGLDILKSLENTVSTAISKAQNGAPSWGGYPSIHAAYQLPGTVKPLPAAVQSVQVQPSYAGGVKSLSSAEHNALLHSPGSLTPPPHKSNVSAMEELVEKVTGKVNIKKEERPPEKEKSSLAKAASPIAKENKDFPKTEEVSGKPQKKGPEAETGKAKKEGPLDVHTPNGTEPLKAKVTNGCNNLGIIMDHSPEPSFINPLSALQSIMNTHLGKVSKPVSPSLDPLAMLYKISNSMLDKPVYPATPVKQADAIDRYYYENSDQPIDLTKSKNKPLVSSVADSVASPLRESALMDISDMVKNLTGRLTPKSSTPSTVSEKSDADGSSFEEALDELSPVHKRKGRQSNWNPQHLLILQAQFASSLRETTEGKYIMSDLGPQERVHISKFTGLSMTTISHWLANVKYQLRRTGGTKFLKNLDTGHPVFFCNDCASQFRTASTYISHLETHLGFSLKDLSKLPLNQIQEQQNVSKVLTNKT
Prediction	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCSCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCSSSCCCCCCCCSSSSSSCCCCHHHHHHHHHHHHSSSSCCCCCCHHHCCCCCCCSSSCCCCHHHCCCCHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHCCCCCC
Confidence	97310136653234587200222223333445678877777666789843222335333578765556765566776667777643455777632101567877788741247888888752124311244456545677754566555566678898886667777776665666666667778866778888775302455543331126888777877666411110465433552268858527867612255678999873426677888887666665576675313554025567887630688898035521147788863477764357777764443664112456777778778998876787543445566898864479998755788642000124688776588898655675576553111478887776642456544456633330357889988878888888778888766777776656766666555664323444567755556755444556644556689888643346443201112445689988888776210124788867889888766768766778788897656877789877889988787644311244566777764234687656788767899843456667766789987667898877777767899877788999988877788887777667899877777876311001355678898887998896322356788743467888999998875435677889988767778988776667777889987545565210135678888999999888887666665446653123561332135557898156787888888775216788344135883011233110354323688887553102311587402113689984375152222115712577877642174234344344777666566642134689
	H:Helix; S:Strand; C:Coil

Predicted Solvent Accessibility

Sequence	20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 600 620 640 660 680 700 720 740 760 780 800 820 840 860 880 900 920 940 960 980 1000 1020 \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| MPRRKQQAPRRSAAYVPEEELKAAEIDEEHVEDDGLSLDIQESEYMCNEETEIKEAQSYQNSPVSSATNQDAGYGSPFSESSDQLAHFKGSSSREEKEDPQCPDSVSYPQDSLAQIKAVYANLFSESCWSSLALDLKKSGSTTSTNDASQKESSAPTPTPPTCPVSTTGPTTSTPSTSCSSSTSHSSTTSTSSSSGYDWHQAALAKTLQQTSSYGLLPEPSLFSTVQLYRQNNKLYGSVFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNRDKDSEKTKRWSKPRKRSLMEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVPLKEPVPAITKLVPSTKKRALQDLAPPCSPEPAGMAAEVALSESAKDQKAANPYVTPNNRYGYQNGASYTWQFEARKAQILKCMECGSSHDTLQQLTAHMMVTGHFLKVTTSASKKGKQLVLDPVVEEKIQSIPLPPTTHTRLPASSIKKQPDSPAGSTTSEEKKEPEKEKPPVAGDAEKIKEESEDSLEKFEPSTLYPYLREEDLDDSPKGGLDILKSLENTVSTAISKAQNGAPSWGGYPSIHAAYQLPGTVKPLPAAVQSVQVQPSYAGGVKSLSSAEHNALLHSPGSLTPPPHKSNVSAMEELVEKVTGKVNIKKEERPPEKEKSSLAKAASPIAKENKDFPKTEEVSGKPQKKGPEAETGKAKKEGPLDVHTPNGTEPLKAKVTNGCNNLGIIMDHSPEPSFINPLSALQSIMNTHLGKVSKPVSPSLDPLAMLYKISNSMLDKPVYPATPVKQADAIDRYYYENSDQPIDLTKSKNKPLVSSVADSVASPLRESALMDISDMVKNLTGRLTPKSSTPSTVSEKSDADGSSFEEALDELSPVHKRKGRQSNWNPQHLLILQAQFASSLRETTEGKYIMSDLGPQERVHISKFTGLSMTTISHWLANVKYQLRRTGGTKFLKNLDTGHPVFFCNDCASQFRTASTYISHLETHLGFSLKDLSKLPLNQIQEQQNVSKVLTNKT
Prediction	65444454254243203455254553464445554454545655442555443661442451644534445363434225544324425444445555456346534444432441331034104442123120404344445452544444444444444445454444444244444344444444444234432422342234213423544235434212303122342421220122434041530130143343044014424124455454444443442243442134344444453304053032004444304413442433452414444443444144444434454445254454443444304544434444432405433402445422434444445541415414541444530442343453445344514442442344233443345355425244424555465545545454445455546655564466664465656545433444443531446425653544442242344415433445454222342113222124135444444465643534442466244344646444454555454446555454356446645664636556554665444465562345655654455554666466655546666456655565546655646544456445445424535254225432441452354645446424525442442134244434542444254445562454232645631342144555545444454454244543144144434426654445454445344445252442544454244434441444514220000010311320242450320043133433220031110000101100010212024412340042024110000010002111103000000100000102100401364255444115444658
	Values range from 0 (buried residue) to 8 (highly exposed residue)

Predicted Contact, Hydrogen and Distance Map Used in D-I-TASSER simulation

Contact Map

Distance Map

Hydrogen bond networks

D-I-TASSER simulation is guided by the consensus contact map (left figure), distance map (middle figure) and Hydrogen bond network (right figure) derived based on confidence scores of AttentionPotential. In the contact, distance map and hydrogen bond networks, the axes mark the residue index along the sequence. For the contact map, each dot represents a residue pair with predicted contact, while for the distance map and hydrogen bond network, a color scale represents a distance of 1-20+ angstroms or a angle of 0-180 degree.

Top 10 threading templates used by D-I-TASSER

Rank

PDB
hit

ID1

ID2

Cov

Norm.
Zscore

Download
alignment

                  20                  40                  60                  80                 100                 120                 140                 160                 180                 200                 220                 240                 260                 280                 300                 320                 340                 360                 380                 400                 420                 440                 460                 480                 500                 520                 540                 560                 580                 600                 620                 640                 660                 680                 700                 720                 740                 760                 780                 800                 820                 840                 860                 880                 900                 920                 940                 960                 980                1000                1020

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SS
Seq

CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCSCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCSSSCCCCCCCCSSSSSSCCCCHHHHHHHHHHHHSSSSCCCCCCHHHCCCCCCCSSSCCCCHHHCCCCHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHCCCCCC
MPRRKQQAPRRSAAYVPEEELKAAEIDEEHVEDDGLSLDIQESEYMCNEETEIKEAQSYQNSPVSSATNQDAGYGSPFSESSDQLAHFKGSSSREEKEDPQCPDSVSYPQDSLAQIKAVYANLFSESCWSSLALDLKKSGSTTSTNDASQKESSAPTPTPPTCPVSTTGPTTSTPSTSCSSSTSHSSTTSTSSSSGYDWHQAALAKTLQQTSSYGLLPEPSLFSTVQLYRQNNKLYGSVFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNRDKDSEKTKRWSKPRKRSLMEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVPLKEPVPAITKLVPSTKKRALQDLAPPCSPEPAGMAAEVALSESAKDQKAANPYVTPNNRYGYQNGASYTWQFEARKAQILKCMECGSSHDTLQQLTAHMMVTGHFLKVTTSASKKGKQLVLDPVVEEKIQSIPLPPTTHTRLPASSIKKQPDSPAGSTTSEEKKEPEKEKPPVAGDAEKIKEESEDSLEKFEPSTLYPYLREEDLDDSPKGGLDILKSLENTVSTAISKAQNGAPSWGGYPSIHAAYQLPGTVKPLPAAVQSVQVQPSYAGGVKSLSSAEHNALLHSPGSLTPPPHKSNVSAMEELVEKVTGKVNIKKEERPPEKEKSSLAKAASPIAKENKDFPKTEEVSGKPQKKGPEAETGKAKKEGPLDVHTPNGTEPLKAKVTNGCNNLGIIMDHSPEPSFINPLSALQSIMNTHLGKVSKPVSPSLDPLAMLYKISNSMLDKPVYPATPVKQADAIDRYYYENSDQPIDLTKSKNKPLVSSVADSVASPLRESALMDISDMVKNLTGRLTPKSSTPSTVSEKSDADGSSFEEALDELSPVHKRKGRQSNWNPQHLLILQAQFASSLRETTEGKYIMSDLGPQERVHISKFTGLSMTTISHWLANVKYQLRRTGGTKFLKNLDTGHPVFFCNDCASQFRTASTYISHLETHLGFSLKDLSKLPLNQIQEQQNVSKVLTNKT

1vt4I

0.08

0.07

2.58

1.25

EigenThreader

EHQYQYKDILSVFEDAFVDNFDCKDVQD--MPKSILSKEEIDHIIMSKDGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC--------LLVLLNVQNAKAWNAFNLSCKTRFKQVTDFLSAATLD---------------HHSMTLTCRPQDLPREVL--TTRLSIIAESIRDGLATWDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHLLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP--SIYLELKVKLENEYALHRSIVDHYNIPKTF------DSDDLIPPYLDQHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE-ENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR-----GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-----------GGGGGGGGGGGGG--------GGGGGGGGGGGGGGG----GGGGGGGGGGGG--GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-----------GGGGGGGGGGGGG-------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-----------------GGGGGGGGGGGGGGGGGGGGGGG------GGGGGGGGGGGGGGG------------GGGGGGGGGGGGGGGGGG--GGGGGGGGGGGGG----------------GGGGGGGGGGGGGGGGGGGGG-----------------------------------------------

5wtjA

0.15

0.12

3.94

1.40

SPARKS-K

DKIVKFFVENIKNNSIKEKIEKILAEIDELIKKKELKKGNCDTEIF----GIFKKHYKV---------NFDSKKFSKKSDEEKIYRYLKGRIEKILVNEQKIEIEKILNESLSEKILKRVKQYTLEHIYLGKLRHNDI--------------------------------DTTVNTDDFSRLH---------AKEELDLELITFFASTNELNKIFSRENINNDENIDFF---------GGDREKNYVLDKKNSKIKIIRDLDFI---------DNKNNITN-----------NFIRKFTKIGTNERNRILHAIDDYNKVINIIQNLISDEEVSKA-L--NLDVVFK----DKKNIITKINDIKISEENNNDIKYLPSFSKVLPEILNLYRNNPKNEPFDTIETLNALIYVNKELYKKLILEESKNIFLQELKKTLIIENYYKNAQISASKGNNKAIKKYNYEELFDF--------------------------------------SDFKNIQEIKKQIKDINDNKTYERIT----VKTSDKTIVINDDFEYIISIFALLNAVINKIRNATSVWSEYQNIDILDEI-----------QLNTLRNECITENWNLNLEEFIQKKEIEKDFDDFKIQTKKEIFNNYYEDIKNNILTEFKDDINGCDVLEKKLEIKFEIDKKSNILQDEQRKSNINKKDLKKKVDQYIKDKDQE-----------------IKSKILCR------IIFNFLKKYKKEIDNLIEDESE---------------NENKFQEIYYPKERKNELYIYKKNLNPNFDKIYGLISNDIKADAKFLFNIDGKNIRKNKISEIDAILKNLNDKLNGYSKEYKEKYIKDDFFAKSFEKDYNRVSEYKKIRDLEFNYDINWKLAIQARFERDLRELGIIK-LISRAYPKRNTAYYKFFGIDLSSIRNYISHF-YIVRN---------------PFADYSIAEQIDNNSTYASVFEVFKKFKLIGLERLKPNLIIELLTKIE------

3gjxA

0.10

0.06

2.11

1.05

CNFpred

---------------------------------------------------------------------------------------------------------------YIGKLNMILVQILKQEWWPTFISDIVGASRTSESL---------------------------------------------------CQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVM-QNAPLVHATLETLLRFLNWI-------PLGYIFETKLISTLIYKFLNVPMFRNVSLKCLTEIAG-QYEEQFETLFTLTMM--------------QLKQMLPL--NTNIRLAYSNGKDDEQNF------------------------------IQNLSLFLCTFLKEHGQLLEKLNLREALMEALHYMLLVSEVEETFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGT---EWSWKNLTLCWAIGSISGAMHEEDEKR-----------------------------------------FLVTVIKDLLGLCEQKRGKDN-----------------------------------------------------------------------KAIIASN-----IMYIVGQYPRFLRAHW----------KFLKTVVNKLFEFMHET--------------------------------------------HDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMP---------FIDEILNNINTIICD------LQPQQVHTFYEAVGYMIGAQTDQ-------------------TVQEHLIEKYMLLPNQVWDS-----IIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHFVIQLGRIYLDMLNVYKCLSENISAAI

2pffB

0.06

0.05

2.47

2.63

MapAlign

--MDAYSTRPLTLSHGSLEHVLLVEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH---ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLVQDYVNKTNLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTIPFSERKLKFSNRFLPVASERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVLTIHFGGEKGKRIRENYSAIFETSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIGHSLGEYAALASLADVMSIESLVEVVFYRGMTMVVERVGKRTGWLVEIVNYNVENQQGDLRALQKSLSLEEGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG----

2dmiA

0.82

0.09

2.60

1.30

HHsearch

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSS----GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGPSSG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

2pffB

0.05

0.04

2.01

1.22

EigenThreader

TRPLTLSHGSLEHVLLVPTASF---FIA--SQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDENDTTLVKTKELIKNYITARIMGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESCYEAYPLENNEGVPSPMLSISNLTQLPAGKQVEISLVNGAKNLVG-------PPQSLYGLNLTLRKERKL-----KFSNRFLPVASPFHSHLLVPALVKNNVSFNAKDIQIPVYDTFDGSDLRVLVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNK---------DGTG---------------VRVIVAGTLDDYGFKQGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG----GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG---------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG----GGGGGGGGGGGGGGGGGGGGG-------------GGGGGGGGGGGGGGGGGG--------GGGGGGGGGGGGGG-----GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG---GGGGGGGGGGGGG---GGGGGGGGGGGGGGGGGGGGG-----------GGGGGGGGGGGG------GGGGGGGGGGGGG----------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-----------GGGGGGGGGGGGGGGGGGGGGGGGGGGG

7aavA

0.13

0.12

4.01

1.38

SPARKS-K

KRDRRHFKRMRFPPFDDEEP----PLDYADNILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLRDSRKYVNGSTYQRWQFTLPMMSTLYRLANQLLTDLVDDNYFYLFDLKAFFTSKAL-----NMAIPGGPKFEPLVRDINLQDINKIIIRQPIRNLPHHVHLTWYHTPNVVFIKTEDPDLINPISHRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPPRPFNL-RSGRTRRALDIPLVKNWYREHCPAGQPSYQKLLKYYVLNALK------HRPPKAQKKRYLFRSFKATKFFQSTKLDW--VEVGLQVCRQGYNMLNLLIHRKNLNYL------------------------------HLDYNFNLKPVKTLTT--KERKKSR--------FGN------AFHLCREVLRLTKLVVDGNVDDGLQYIFAHVGQTGHLIRFNTGPVGKGPGCGFWAAGWRVWLITPLLERWLGNLLARQFEGRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEKANIPWKVP-------GLPTPIENMILRYVKAKADWWTNTAHYNRIRRGA--------------TVDKTVCKEQERQHNYLKDGPYITAEEAVHWLESRRFSPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDN------------------PHEALSRIKRHLLTQR--AFKEVGIEFMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADPPPLLVYKWCQGINNLQDVWETSEGECNVMLESRFEKMYEKIDLTLAKNNDMNHTNSYGIIRGLQVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATADEARDLINNKKCWPRDARMRKHDVNLGRAVFWDIKNRLPRSNSFVSVYSKDNPNLLFNMCGFE----CRILPKCRTSYEEFTHKDGLQNEVTKEQCFLRVDRVRQITTFTKIVNKWNTALIFRTQELLDLLVKCENKIQTRIKILNSKM

3gb8A

0.10

0.04

1.57

1.01

CNFpred

------------------------------------------------------------------------------------------------------------------LISTLIYKFLNVPMFRNVSLKCLTEI-----------------------------------GVSVSQYEEQ-----------FVTLFTLTMMQLKQML-------PLNTNIRLAYSNGK---------------DDEQNFIQNLSLFLCTFLKE---------------------HDQLIEKRLLRETLMEALHYMLLVVEETEIFKICLEYW-------------NHLAAELYRES------------VPPRRQL---------------------------------YLPMLFKVRLLMVSRMA---DTDSINLYKNMRETLVYLTHLD------------------------------------------------------------------------------------------------------YVDTERIMTEKLHNQVNGT---EWSWKNLTLCWAIGSISGAMHEE-----------------------------------------DEKRFLVTVIKDLLGLCEQKRGKDN-----------------------------------------------------------------------KAIIASN-----IMYIVGQYPRFLRAHW----------KFLKTVVNKLFEFMHET--------------------------------------------HDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMP---------FIDEILNNINTIICD------LQPQQVHTFYEAVG----------YMIGAQTDQTV---------QEHLIEKYMLLPNQVWDS-----IIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHFVIQLGRIYLDMLNVYKCLSENISAAI

1vt4I3

0.06

0.03

1.46

2.11

MapAlign

-----------------HRSIVDHYNIPKTFDSDDLIP----------------PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE----------------------------------RLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG---------------------------------------------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-----------------------------------------------------------------------------------------------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG----------------------------------------------------------------------------------------------------------------------------------GGGGGGGGG------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG----------GGGGGGGGGGGGGGGGGG---------------------GGGGGGGGG--------------------GGGGGGGGGGGGGGGGG-------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-GGGGGGGGGGGGG----------------------

5a1uC

0.07

0.04

1.77

1.18

EigenThreader

--------------------------------------MLTKFETKSARVKGLSFHPSLHNGVIQLWDRMCTHDGPVRGIDFH---KQQPLFVSGGDDYYKLRRHLD------------------YIRTTFFHHEYPWWQSRTCVHNHYQFHPSEDLISGLRKKNLSPGAVESDVRGITGVDLFGTTDAVVKHVLEG------------------HDRGVNWAAFHPSGA---DDRQVKIESKAWEVRGHYN------NVSCAVFHPRQEWDMSKRTDHDRHPNLNL----------------------------------FAAGHDGGMLERERPAKDRFLR--QLDFNSSKDVAVMQLRSGSKFPVFNMSYNPAENAVLL--CTRASNLENS---------------------------------------------TYDLYTIPKDADSQNPDAPEGKRSSG-----LRNRMHSLLIKNLKNEITKKIQVPNC---DEIFYAGTGNLL----------LRDADSITLFD------------------------------------VQQKRTLISK------VKYVIWSADMSHVALLAKHAIHENIRVKSGAWDESGVDLPIRECR--------------------PRVLTIDPTEF--KFKLALINRKYDEVLHMVRNA----KLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEIALEAAKALD---DKNCWEKLGEVALLQG--------NHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMMKIAEIRKDMSGHYQNALYLGDVSEKNCGQKSLAYLSAATHEAESLKETFDPEKETIPDIDPNAKLLQPPAPI-------MPL---DTNWPLLTV--------------------------------------------------------------------------------------------------------------------------------

(a)	ID1 is the number of template residues identical to query divided by number of aligned residues.
(b)	ID2 is the number of template residues identical to query divided by query sequence length.
(c)	Cov is equal the number of aligned template residues divided by query sequence length.
(d)	Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold.
(e)	Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz).
(f)	Template residues identical to query sequence are highlighted in color.

Top 1 final models from D-I-TASSER

Click to view	Rank^a	Download	Estimated TM-score^b
	1	model1.pdb.gz	0.3142

(a)

D-I-TASSER simulations generate a large ensemble of structural conformations, i.e. decoys. These decoys are clustered by SPICKER based on pairwise structure similarity to report up to five final models from the five largest clusters. Models are ranked in descending order of cluster size. If the simulations converge well, it is possible to have less than 5 models generated, which is usually an indication of good model quality.

(b)

The model confidence is quantitatified by estimated TM-score (eTM-score), calculated based on significance of threading template alignments, contact map satisfaction rate, mean absolute error between distance of model and distance of AttentionPotential, and convergence of D-I-TASSER simulations. eTM-score is typically in the range of [0, 1], with higher eTM-score signifies higher model confidence.

Proteins with similar structure

Top 10 structural analogs in PDB (as identified by TM-align)

Rank	PDB Hit	TM-score	RMSD^a	IDEN^a	Cov.	Download Alignment
1	5wtjA	0.77	3.10	0.101	0.827	model1_5wtjA.pdb.gz
2	6vrbA2	0.53	5.88	0.078	0.658	model1_6vrbA2.pdb.gz
3	5w1hA	0.53	6.45	0.064	0.671	model1_5w1hA.pdb.gz
4	5xwpA	0.51	6.82	0.052	0.668	model1_5xwpA.pdb.gz
5	6iv9A	0.35	7.76	0.042	0.493	model1_6iv9A.pdb.gz
6	6e9eA	0.35	7.66	0.040	0.482	model1_6e9eA.pdb.gz
7	6aayA	0.33	8.33	0.069	0.478	model1_6aayA.pdb.gz
8	6vr4A	0.31	9.01	0.048	0.478	model1_6vr4A.pdb.gz
9	2g47B	0.30	9.03	0.041	0.463	model1_2g47B.pdb.gz
10	3s5hA	0.30	8.76	0.050	0.453	model1_3s5hA.pdb.gz

(a)	Query structure is shown in cartoon, while the structural analog is displayed using backbone trace.
(b)	Ranking of proteins is based on TM-score of the structural alignment between the query structure and known structures in the PDB library.
(c)	RMSD^a is the RMSD between residues that are structurally aligned by TM-align.
(d)	IDEN^a is the percentage sequence identity in the structurally aligned region.
(e)	Cov. represents the coverage of the alignment by TM-align and is equal to the number of structurally aligned residues divided by length of the query protein.

Predicted Gene Ontology (GO) Terms

Molecular Function (MF)

GO term	Cscore^GO	Name
GO:0003682	0.97	chromatin binding
GO:0001078	0.97	transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003824	0.63	catalytic activity

Download full result of the above consensus prediction.

Click the graph to show a high resolution version.

(a)

Cscore^GO is the confidence score of predicted GO terms. Cscore^GO values range in between [0-1]; where a higher value indicates a better confidence in predicting the function using the template.

(b)

The graph shows the predicted terms within the Gene Ontology hierachy for Molecular Function. Confidently predicted terms are color coded by Cscore^GO:

[0.4,0.5)

[0.5,0.6)

[0.6,0.7)

[0.7,0.8)

[0.8,0.9)

[0.9,1.0]

Biological Process (BP)

GO term	Cscore^GO	Name
GO:0048856	1.00	anatomical structure development
GO:0044767	1.00	single-organism developmental process
GO:0044707	1.00	single-multicellular organism process
GO:0006357	1.00	regulation of transcription from RNA polymerase II promoter
GO:0007275	0.97	multicellular organism development
GO:0071704	0.87	organic substance metabolic process
GO:0044238	0.59	primary metabolic process
GO:0009987	0.54	cellular process

Download full result of the above consensus prediction.

Click the graph to show a high resolution version.

(a)

Cscore^GO is the confidence score of predicted GO terms. Cscore^GO values range in between [0-1]; where a higher value indicates a better confidence in predicting the function using the template.

(b)

The graph shows the predicted terms within the Gene Ontology hierachy for Biological Process. Confidently predicted terms are color coded by Cscore^GO:

[0.4,0.5)

[0.5,0.6)

[0.6,0.7)

[0.7,0.8)

[0.8,0.9)

[0.9,1.0]

Cellular Component (CC)

GO term	Cscore^GO	Name
GO:0005634	1.00	nucleus
GO:0044444	0.63	cytoplasmic part

Download full result of the above consensus prediction.

Click the graph to show a high resolution version.

(a)

Cscore^GO is the confidence score of predicted GO terms. Cscore^GO values range in between [0-1]; where a higher value indicates a better confidence in predicting the function using the template.

(b)

The graph shows the predicted terms within the Gene Ontology hierachy for Cellular Component. Confidently predicted terms are color coded by Cscore^GO:

[0.4,0.5)

[0.5,0.6)

[0.6,0.7)

[0.7,0.8)

[0.8,0.9)

[0.9,1.0]

Predicted Enzyme Commission (EC) Numbers

Top 5 enzyme homologs in PDB

Rank	Cscore^EC	PDB Hit	TM-score	RMSD^a	IDEN^a	Cov.	EC Number	Predicted Active Site Residues
1	0.060	2pffB	0.227	7.96	0.052	0.327	2.3.1.86	306,902
2	0.060	1t3tA	0.271	9.07	0.030	0.421	6.3.5.3	302
3	0.060	1bxrA	0.258	9.12	0.029	0.406	6.3.5.5	240
4	0.060	2vkzG	0.271	9.46	0.036	0.439	2.3.1.38 3.1.2.14	185
5	0.060	2gtqA	0.255	8.83	0.039	0.392	3.4.11.2	NA

	Click on the radio buttons to visualize predicted active site residues.
(a)	Cscore^EC is the confidence score for the Enzyme Commission (EC) number prediction. Cscore^EC values range in between [0-1]; where a higher score indicates a more reliable EC number prediction.
(b)	TM-score is a measure of global structural similarity between query and template protein.
(c)	RMSD^a is the RMSD between residues that are structurally aligned by TM-align.
(d)	IDEN^a is the percentage sequence identity in the structurally aligned region.
(e)	Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein.

Predicted Ligand Binding Sites

Template proteins with similar binding site:

Rank	Cscore^LB	PDB Hit	TM-score	RMSD^a	IDEN^a	Cov.	BS-score	Lig. Name	Download Complex	Predicted binding site residues
1	0.01	1xwjA	0.131	6.13	0.054	0.167	0.17	III	complex1.pdb.gz	183,194,195,198,201
2	0.01	2g56A	0.299	8.98	0.041	0.462	0.16	III	complex2.pdb.gz	144,178,179
3	0.01	3s90B	0.100	6.33	0.056	0.129	0.24	III	complex3.pdb.gz	179,181,195,198,201,204,205,208
4	0.01	1llzA	0.259	8.85	0.035	0.399	0.22	FMN	complex4.pdb.gz	181,182,193,194,195,196
5	0.01	2gdcA	0.109	5.84	0.033	0.136	0.22	III	complex5.pdb.gz	181,182,194,195,198,201,235
6	0.01	2r7wA	0.286	9.50	0.042	0.470	0.28	GTP	complex6.pdb.gz	141,143,195
7	0.01	1ydiA	0.118	6.56	0.037	0.157	0.19	III	complex7.pdb.gz	177,183,194,197,200,201,204,207
8	0.01	2gwwA	0.119	6.38	0.063	0.156	0.26	III	complex8.pdb.gz	194,197,200,201,204,208
9	0.01	1t01A	0.114	5.02	0.068	0.135	0.21	III	complex9.pdb.gz	174,175,182,183,194,197,198,201,204,205
10	0.01	1zw3A	0.115	4.81	0.061	0.135	0.21	III	complex10.pdb.gz	197,198,201,202,205,208

	Click on the radio buttons to visualize predicted binding site and residues.
(a)	Cscore^LB is the confidence score of predicted binding site. Cscore^LB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction.
(b)	BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
(c)	TM-score is a measure of global structural similarity between query and template protein.
(d)	RMSD^a the RMSD between residues that are structurally aligned by TM-align.
(e)	IDEN^a is the percentage sequence identity in the structurally aligned region.
(f)	Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein.

[Click result.zip to download all results on this page]

References:
1.	Wei Zheng, Chengxin Zhang, Yang Li, Robin Pearce, Eric W. Bell, Yang Zhang. Folding non-homology proteins by coupling deep-learning contact maps with I-TASSER assembly simulations. In preparation, 2020.