Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360
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| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSCCCCC LGLDAYPYPSAPLPAPSPGLKLEPPLTPRCPLDFAPQTLSFPYARDDLSLYGASPGLGGTPPSQNNVRAVPQPGAFQRACQPLPASQPCSEPVRPAQEAEEKTWLPSCRKEKLQPRLSEHSGPPIVIRDSPVPCTPPALPPCARECQSLPQKEGARPPSSPPMPVIDNVFSLAPYRDYLDVPAPEATTEPDSATAEPDSAPATSEGQDKGCRGTLPAQEGPSGSKPLRGSLKEEVALDLSVRKPTAEASPVKASRSVEHAKPTAAMDVPDVGNMVSDLPGLKKIDTEAPGLPGVPVTTDAMPRTNFHSSVAFMFRKFKILRPAPLPAAVVPSTPTSAPAPTQPAPTPTSGPIGLRILAQQPLSVTCFSLALP |
1 | 2nbiA1 | 0.18 | 0.16 | 5.05 | 1.54 | SPARKS-K | | DASRPPSCLSFGRPDCDVLPTPQNINCPRCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPDCGEVIEECPLCFLPTSDPARPPDCTAVGRPVLPFPNNLGCPACCPFECSPDNPMFTPSP---DGSPPNCSPPTPQPSTPAPSSQPSQCAEVIEQCP----IDECFSSRP-LDCTDPAVNRPPTPQNINCPARPDNPMFTPSPDGSCSPTMMPSPEPSSQPSDCGEVIEECPIDLPKSDSARPPDCTAVGRPDCNVLPFPNNIG------CPSCCP----FECSPDNPMFTPSPDGSP-------------------PNCSPTMLPSPSPSAVTVPLTPAPSSAPTR--------------------- |
2 | 1vt4I3 | 0.05 | 0.05 | 2.22 | 1.00 | MapAlign | | -----GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG---------------- |
3 | 2nbiA1 | 0.16 | 0.15 | 4.93 | 1.14 | MUSTER | | SDLNPSSQPSEECPIDECFLPYSDASRPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAVGRPDPFPNNLGCPACCPFECSPDNPMFTPSPDGSPP------------------NCSPTMLPTPQPSTPTVITSPAPSSQPSQ-CAEVIEQCPIDECFLPYGDSSRPLDCTDPAVNRPDCDVLPTPQNTPSPDGSPPICSPTMMPSPEPSSQPSDCGEVIEECPIDACFLPKSDSARPPDCTAVG---PDCNVLPFPPFECSPDNPMFTPSPDGSPPNCSPTMLPSPSPSAVTVPLTPA--PSSAP |
4 | 5hy7A | 0.05 | 0.05 | 2.38 | 0.67 | CEthreader | | HPKGIRHIVQGRVNEWPAPQHRSIVAATTNENQVVIALSSGEIVYFEMDADGSLAEYDEKKQMSGTVTSLSLGKVPEGLRRSSFLAVGCDDCTVRILSLDPESTLEMKSIQALTAAPSSLLIMSMEDSTGGTTLYLHIGLHSGVYLRTVLDEITGELTDTRQKFLGPKPTKLFQVTVQNQTCVLALSSRPWLGYTAPITRNFVMTPLSYTELGYTWSFNSEQCQEGMVGIHANYLRITMIQKSCPLTYTPKRLYVIEADNNTLPPELVLPPEDFGYPKARGRWASCIEIVDPVSEEQPRVLKRIELEGNEAAVSAAVVPFASQDGESFLIVGTGKDMVLNPRASTEGAIHVYRFIDDGRDLEFIHKTIIEEP |
5 | 5v8kA | 0.06 | 0.06 | 2.65 | 0.62 | EigenThreader | | PRAQVFEYFKLKVPATRGAVLKAHINHLGNVAAMVSFILVHHLSWDPATQGVLWAPATMFYARLYQLGLDAVALSHFFALIATLWGLHMAFYGTGLSFDMFGPITPATMAGNHVAFGAVFFLGGIFHYFAGFNTKRFATVVFAMIIWQHPQLGFGFMREYAVSQYAGPGLLVKQAILGHLVMGIMFWIGGVFHGAHFMLRVLNDPKLAEEMKDFADIHAASKTGLFAHMTYINEFVAAHAIAGGLHFTMVPMWRMVFFSKVSDGEFPCLGPAYGGTCSISLVDQFYLAIFFS---------LQVIAPAWFYIDGCWMGSFVAVASPLTNMGYFSYIIQQTTAMFSRYDGHMIQALLGAHFIWAFTFSMLFQY |
6 | 2xd8A | 0.10 | 0.08 | 3.10 | 0.56 | FFAS-3D | | ---------------------------------MANANQV-ALGRSNLSTGTGYGGATDKYASGEMFKGFQHETIARDLVTKRTLKNGKSLQFIYTGRMTSSFHTPGTPILGNADKAPPVAEKTIVMDDL---LISSAFVYDLDETLAHYELRGEISKKI--------GYALAEKYDRRSASPVSATNFVEPGGTQIRVGSGTNESDAFTASALMDEKGVSSQGRCAVLNPRQYYALDVQGSALQSGNGVIEIAGHIYKSMNIPFLGKYGVKYGGTTGETSPGNLGSHIGPTPENANATGGVNNDYGTNAELGAKSCGLIFQKEAAGVVEAIGPQVQVTNGDVSVIYGRMAMGADYLNPAA----------- |
7 | 4nl6A | 0.11 | 0.08 | 2.82 | 1.47 | SPARKS-K | | --------------------------------------------------MAMSSGGSGGGVPEQEDSVLFRRG-------TGQSDDSDIWDDTALIKAYDKAVAKHALKNGDICETSGKPKT----TPKRKPAKKNKSQKKNTAASLQQWKVGDKC--------------SAIWSE--DGCIYPATI--ASIDFKRETCVVVYTGYGNREEQNLSDLLSPICEVANNIE-----------QNAQENENESQVSTDESENSRSPGNKSDNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNG----------------PPPPPPPPPPHLLSCWLPPFPSGPPIIPPPPPICPDSLDDADALGSMLISWY |
8 | 5ymrB | 0.05 | 0.03 | 1.41 | 0.67 | DEthreader | | LFDRPRID-RA-FTMTEGQLRWAMIENMTVYRAG---------GVLYPDGDFLGTAIEDLPNRAEDLMSNETSRSIQWVHDY-----LKRGFRCDILKRAKLAAECAWVNARTHEAVQQWTQSTGTGFGAYINFAAEMMLKYGDTDLGAHTTQHHLFLYVVLSKKFEDAPYASIARDIDASVKYGRRYSPEL------G---MH--NDVRYVPSHVPFGRVV--AWSALSASHGADISNNSKNYGM-------------------------------------------------R-DRAARFCDLKL---------------------------------------------------------------- |
9 | 2pffB | 0.08 | 0.07 | 2.92 | 0.95 | MapAlign | | -----GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVF---------- |
10 | 2atyA | 0.09 | 0.08 | 3.06 | 1.04 | MUSTER | | ----DISCGS-PPPILNGRISYYSPIAVGTVIRYSCSGTFRL--IGEKSLLCITKDKVDGTWDKPAPKCEYFNKY--SSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNQANNMWGP---TRLPTCVSVFPLEGSIEGRGGSELADPEVPRDC-------------------GCKPCICTVPEVSSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGAAFPAPIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVS-----------MITDFFPEDITQPAENYKNTQPIMNTNESYFVYSKLNVQKSNWETFTCLHEGLH |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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