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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.01 | 3cmvD | 0.326 | 7.53 | 0.048 | 0.536 | 0.19 | ANP | complex1.pdb.gz | 79,80,81,82,83,134 |
| 2 | 0.01 | 1g9bA | 0.309 | 8.25 | 0.032 | 0.556 | 0.15 | BAB | complex2.pdb.gz | 79,89,93 |
| 3 | 0.01 | 3cmvG | 0.294 | 6.91 | 0.037 | 0.460 | 0.19 | ANP | complex3.pdb.gz | 81,82,83 |
| 4 | 0.01 | 2y0pA | 0.285 | 7.47 | 0.052 | 0.476 | 0.18 | ACO | complex4.pdb.gz | 79,82,143 |
| 5 | 0.01 | 2y0pB | 0.281 | 7.66 | 0.040 | 0.480 | 0.12 | ACO | complex5.pdb.gz | 158,159,171,172 |
| 6 | 0.01 | 3cmvA | 0.356 | 7.82 | 0.041 | 0.608 | 0.15 | ANP | complex6.pdb.gz | 79,80,82,83,138 |
| 7 | 0.01 | 2y0pD | 0.280 | 7.79 | 0.047 | 0.484 | 0.13 | ACO | complex7.pdb.gz | 154,159,160 |
| 8 | 0.01 | 2xt6A | 0.351 | 7.48 | 0.042 | 0.582 | 0.14 | TPP | complex8.pdb.gz | 35,80,82 |
| 9 | 0.01 | 2nm1A | 0.190 | 7.45 | 0.018 | 0.311 | 0.17 | III | complex9.pdb.gz | 78,79,80,81,137 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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