Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300
| | | | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCSSSSSCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCSSSSSSCCCCHHHHHHHHHHCCCCCCCCCSSCCCHHHHHCCCCCSSSSCCCCCCHHHCCCCCCSSSSSSSSSCCCCCCHHHHHHHHHCCCSSCCCHHHHCHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCC MDWKLEGSTQKVESPVLQGQEGILEETGEDGLPEGFQLLQIDAEGECQEGEILATGSTAWCSKNVQRKQRHWEKIVAAKKSKRKQEKERRKANRAENPGICPQHSKRFLRALTKDKLLEAKHSGPRLCIDLSMTHYMSKKELSRLAGQIRRLYGSNKKADRPFWICLTGFTTDSPLYEECVRMNDGFSSYLLDITEEDCFSLFPLETLVYLTPDSEHALEDVDLNKVYILGGLVDESIQKKVTFQKAREYSVKTARLPIQEYMVRNQNGKNYHSEILAINQVFDILSTYLETHNWPEALKKGVSSGKGYILRNSVE |
1 | 4jwjA | 0.27 | 0.16 | 4.86 | 0.83 | DEthreader | | --H-------------------------------------------------------------------------------------------------------M-PR-INVNQ--TD--SGIEIILDCSFDELMNDKEIVSLSNQVTRAYSANRRANHFAEIKVAPFD--KRLKQRFETLNTNYNWNHFKFLPDDMFGDISKDKIVYLTADTEEKLEKLEPGMRYIVGGIVDKNRYKELCLKKAQKMGIPTRRLPIDE-YIN-L----EGRRVLTTTHVVQLMLKYFDDHNWKNAFESVLPP----------- |
2 | 5nfjA | 0.31 | 0.17 | 5.17 | 2.53 | SPARKS-K | | ---------------------------------------------------------------------------------------------------------------------------MQPLVFDMAYENYMKRKELQNTVSQLLESEGWNRRNVDPFHIYFCNLKIDGALHRELVKRYEKWDKLLLTSTEKSHVDLFPKDSIIYLTADSPNVMTTFRHDKVYVIGSFVDKSMQPGTSLAKAKRLNLATECLPLDKYLQWEIGNKN-----LTLDQMIRILLCLKNNGNWQEALQFV-PKR---------- |
3 | 4jwjA | 0.26 | 0.16 | 4.78 | 1.32 | MapAlign | | ---------------------------------------------------------------------------------------------------------------HMPRINVNQTDSGIEIILDCSFDELMNDKEIVSLSNQVTRAYSANRRANHFAEIKVAPFD--KRLKQRFETTLKNTNWNHFKFLPDDMFEHISKDKIVYLTADTEEKLEKLEPGMRYIVGGIVDKNRYKELCLKKAQKMGIPTRRLPIDEYI------NLEGRRVLTTTHVVQLMLKYFDDHNWKNAFESVLPP----------- |
4 | 4jwjA | 0.26 | 0.15 | 4.70 | 1.31 | CEthreader | | ---------------------------------------------------------------------------------------------------------------HMPRINVNQTDSGIEIILDCSFDELMNDKEIVSLSNQVTRAYSANRRANHFAEIKVAPFDKRLQRFETTLKNTNYENWNHFKFLPDDKIMFISKDKIVYLTADTEEKLEKLEPGMRYIVGGIVDKNRYKELCLKKAQKMGIPTRRLPIDEYINLE------GRRVLTTTHVVQLMLKYFDDHNWKNAFESVLPP----------- |
5 | 5nfjA | 0.31 | 0.17 | 5.17 | 1.78 | MUSTER | | ---------------------------------------------------------------------------------------------------------------------------MQPLVFDMAYENYMKRKELQNTVSQLLESEGWNRRNVDPFHIYFCNLKIDGALHRELVKRYQKWDKLLLTSTEKSHVDLFPKDSIIYLTADSPNVMTTFRHDKVYVIGSFVDKSMQPGTSLAKAKRLNLATECLPLDKYLQWEIGNK-----NLTLDQMIRILLCLKNNGNWQEALQ-FVPKR---------- |
6 | 5nfjA | 0.30 | 0.17 | 5.09 | 4.90 | HHsearch | | ---------------------------------------------------------------------------------------------------------------------------MQPLVFDMAYENYMKRKELQNTVSQLLESEGWNRRNVDPFHIYFCNLKIDGALHRELVKRYEKWDKLLLTSTEKSHVDLFPKDSIIYLTADSPNVMTTFRHDKVYVIGSFVDKSMQPGTSLAKAKRLNLATECLPLDKYLQWEIG-----NKNLTLDQMIRILLCLKNNGNWQEAL-QFVPKR---------- |
7 | 4fmwA | 0.34 | 0.19 | 5.59 | 2.33 | FFAS-3D | | ----------------------------------------------------------------------------------------------------------------------DVVHSTLRLIIDCSFDH-LVLKDIKKLHKQIQRCYAENRRALHPVQFYLTSHGGQLKKNDENDKGW--VNWKDIHIKPEHYSELIKKEDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFV----------RKVLAVNHVFEIILEYLETRDWQEAFFTILPQR---------- |
8 | 5nfjA | 0.30 | 0.17 | 5.09 | 1.13 | EigenThreader | | ---------------------------------------------------------------------------------------------------------------------------MQPLVFDMAYENYMKRKELQNTVSQLLESEGWNRRNVDPFHIYFCNLKIDGALHRELVKRYEKWDKLLLTSTEKSHVDLFPKDSIIYLTADSPNVMTTFRHDKVYVIGSFVDKSMQPGTSLAKAKRLNLATECLPLDKYL-----QWEIGNKNLTLDQMIRILLCLKNNGNWQEALQFVP---KR-------- |
9 | 4jwfA | 0.31 | 0.17 | 5.26 | 1.65 | CNFpred | | ------------------------------------------------------------------------------------------------------------------------VPSSIRIVLDCAFDDLMNDKEINSLCQQVTRCHSANRTALHPVELFATNFGGRKTRQDFVLKG--QQNNWKYNPTTKSYLEEFQKEKLVYLSADSDNTITELDEDKIYIIGAIVDKNRYKNLCQNKASEQGIKTAKLPIDEYIKIT------DRKILTVNQVFEILSLWLEYRDWEKAFMEVIP------------ |
10 | 5nfjA | 0.31 | 0.17 | 5.26 | 0.83 | DEthreader | | --------------------------------------------------------------------------------------------------------------------------M-QPLVFDMAYENYMKRKELQNTVSQLLESEGWNRRNVDPFHIYFCNLKIDGALHRELVRYQEKWDKLLLTSTEKSHVDLFPKDSIIYLTADSPNVMTTFRHDKVYVIGSFVDKSMQPGTSLAKAKRLNLATECLPLDKYLQWE-----IGNKNLTLDQMIRILLCLKNNGNWQEALQ-FVP--KR-------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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