Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360
| | | | | | | | | | | | | | | | | | |
| SS Seq | CCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC MGCSSSALNKAGDSSRFPSVTSNEHFSTAEESESCFAQPKPHALGRESTVDGNVQRESRPPLQKLKVSAEPTANGVKPLQEQPLAKDVAPGRDATDQSGSTEKTQPGEGLEESGPPQPGGKEDAPAAEGKKKDAGAGTEAESLKGNAEAQPLGPEAKGQPLQAAVEKDSLRAVEVTENPQTAAEMKPLGTTENVLTLQIAGELQPQGTVGKDEQAPLLETISKENESPEILEGSQFVETAEEQQLQATLGKEEQPQLLERIPKENVTPEVLDRSQLVEKPVMNDPFHKTPEGPGNMEQIQPEGIVGSMEHPARNVEAGAYVEMIRNIHTNEEDQRIEGETGEKVETDMENEKVSEGAETKEEETGEVVDLSAAT |
1 | 5jcss | 0.10 | 0.10 | 3.73 | 1.87 | SPARKS-K | | DKAPTSILLSLLEK-RELTIPSRGETVKAANGFQLISRINEDHQKDSSNKIYNLNMIGMRIWNVIELEEPSEEDLTHILAQKPILTNLIPKLIDSKSIYMNTKFISLNKGAHTRVVSVDILFKNNGINKPDQLIQSSVYDSIFSEAADCFAGAIGEFKALEPIIQAIGESLDIASSRISLFLTQHVPTLENLDDSILLKEKLNIQKKSMNSTLSLRLMEQISVQMTEPVLLVGETGTKTTVVQQLAKMLAVPIQENFETLFNATFSLKKNEKFHKMLHRCFNKNQWKNVVKLWNEAYKMAQSI---LKITNTENENENAKKKKRRLNTHEKKLLLDKWADFNDSVKKFEAQNFVEGSLVKTIRAGEWLEVNLAT |
2 | 1s1dA | 0.08 | 0.06 | 2.42 | 1.08 | MapAlign | | ---PLSPPQRTPAGIRYRIAVIADLDTESRAQEENTWFSYLKKGYLTLSDSGDKVAV----EWDKDHGVLESHLAEKGRGMELSDLIVFNGKLYSVDDRTGVVYQIEGSKAVPWVILSDGDGTVEKGF------------------------------------------------------------------------KAEWLAVKDERLYVGGLGKEWTTTTGDVVNENPEWVKWVSNYNALRAAAGIQPPGYLIHESACWSDTLQRWFFLPR----------RASQERYSEKDDERKGANLLLSASPDFGDIAVSHVGAVVPTHGFSSFKFIPNTDDQIIVALKSEEDRVASYIMAFTLDGRFLLPETKI |
3 | 2nbiA1 | 0.11 | 0.10 | 3.71 | 1.12 | MUSTER | | ------------QPSDLNPSSQPSECADVLEECPIDECFLPYSDASRPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTGRPDCDVLPFPNNLGCPACCPFECSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPSQCAEVIEQCPPYGDSSRPLDCTDPAVNRPDCDVLPTPQNINCPAAFECRPDNPMFTPSPDGSPPICSPTMMPSPEPSSQ-PSDCGEVIEECPIDACFLPKSDSARPPDCTAVGRPDCNVLPFPNNIGCPSCCPFECSPDNPPDGSPPNCSPTMLPSPSPSAV |
4 | 3zwuA | 0.06 | 0.06 | 2.66 | 0.56 | CEthreader | | MSLFEFPGEKNRAAINNEYTNYRYLYPHGGMPQSAEDVRKALACEGVSVIEVQRKNGQWQFVQGSRYNRRIHGNSPLRISGPAAGHELMKTSADKHGKKVLGTFQNYLTCEENFTDCFGSSNAQQQFDPAQKRYGVSAASREINWHPFDPRFDMAKNPNELNRHGWVVEIDPFDPQSTPVKRTALGRFKHENAALAETDDGRAVVYMGDDERGEFIYKFVSRDKINHRNAKANRDILDHGTLYVARFDAGDGNPDHPKGQGQWIELTHGKNGIDASSGFADQAEVLIHARLAASVVGATRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWDLFVVAGNPSVHAGTPKGGSSNIT |
5 | 4rg6A | 0.07 | 0.06 | 2.71 | 0.65 | EigenThreader | | KLAEGEQILSGGVFNKQKSEFGDSACFTLSLLGHVYCKTDRLAKGSECYQKSLSLNPFLWSPFESLCEIGEKPDPDQTFKFTLQKAAAEGLMSLLREMGKGYLALCSYNCKEAINILSHLPSHHYNTGWVLCQIGRAYFELSERVEGMEIYSTTLWHLQKDVALSVLSKDLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEE-----LDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQKALDINPQSSVLLCHIGVVQHALTLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEELKQIVVYFLIGKVYKKLGQTHLALMNFSWAMDLDP-- |
6 | 6ezoE | 0.10 | 0.09 | 3.20 | 0.43 | FFAS-3D | | MEFQAVVM-AVGGGSRMTDLTSS--------------IPKPL-----------LPVGNKPLIWYP-LNLLERV-GFEEVDVQKALCAEFKMKMKPDIVCIPDDADMGTADSLRYIYPKLKTDVLVLSCDLITDVALHEVVDLFRAYDASLAMLMRKRDFI--GVDSTGKRLLFMANEADLDEELVIKGSILQKHPRIRFHTGLVDAHL--YCLKKYIVDFLMENGSITSI-----------RSELIPYLVRKVHIMKEGLCSRVSTLGLYMEANRQVPKLLSSAQIVSKHLVGVDSLIGPETQIGEKSSIKRSVIGSSCLIKDRVTITNCLLMNSVTVEEGSNIQGSVNNAVIEKGADIKDCLIGSGQRIEAKA |
7 | 6ezoI | 0.09 | 0.09 | 3.25 | 1.68 | SPARKS-K | | IDYTLEFLTATGV-QETFVFCCWKAAQIKEHLLKS-KWCRPTSLNVVRIITSELYRSLGDVLKALVRSDFLLVYG-DVISNINITRALEERLRRKLEKNVSVMTMIFKESSPSHPTRCHEDNVVVAVDSTTNRVLHFQKTQLRRFAFPLSLFQGSSDGVE----VRYDLLDCHISICSPQVAQLFTDN---FDYQTRDDFVRGLLVN--EEILGNQIHMHVTAKEYGARV--SN----LHMYSAVCADVIRRWVY---PLTPEANSCTHSRHNIYRGPEVSILEENVLLGSGTVIGSNCFITNSVIGPGCHIGDNVVLDQTYLWQGVRVAAGAQIHQSLLCDNAEVK-ERVTLKPRSVLTSQVVGPNITLPEGS |
8 | 7k10A | 0.06 | 0.04 | 1.80 | 0.67 | DEthreader | | -------DP--I--IAKQLFSSLSGILKEMDKITKLLQDFNRFLNTTIQSCQHAAL----------GCVGLLALRVELALYEYDVLRGIFTS--KQI-QSA----------Q-DE-----------EWKSYCST-SFY-ETY--------------------GELQKALELSLRYYIQQFIISKNPLKRLLNTWTNR-Y----DAKM-------------------FSMKMKMIDARKFRLSHCRSRSQGCQVTVTQILLGQHLSEAVQAAEVIDAMTEARLSDGQTYSVVPMTSRLGFDWNFEQKMLKKG-----GSWIQEINWYRQKICYAKRKLAGANPAVITCDELLGHEKAPFRVAAREPES------- |
9 | 6rw9A | 0.07 | 0.07 | 2.94 | 1.08 | MapAlign | | KVVSGYHDTVNINQGNTWFIGTSQTEPKKYYWRKADHSKCQNGRFAANAWSDWKEITCAVNPYGDMVRPVIFHSRLYLLWIEKQVQKDNTGKDTASFTIAWYQIEKETQPNSFGLHIQPDMSCKKEPPLYPTVSRETLAFPFGKLSITIPAGADINNLDCTIKVRFKNTDVLAATTTYKLVIKKTDPVQKVISLYTTPDGAQYMEWDGYRTRLQDTLYLNATYQKEATKQIELFYYTPMMVATRLLQEQNFTEANRWLSYIWQPAASGAGDWRVRPLKEDTSWNADPLDSVDPDAVAQNDPMHYKVSTLMKLLDLLIARGDKAYRMQERDTLNEAKMWYMQALGLYWQMLEMRLFNLRNNLSIDGQPLS----- |
10 | 2atyA | 0.06 | 0.06 | 2.44 | 1.12 | MUSTER | | ISCGPPPILNGRISYYSTPIAVGTVIR-SGTFRLIGEKSLLCITKDKVDGTWDKPAPKCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSACKTNFSMNGNKSVWCQANNMWGPTRLPTCVSVFPLEGSIEGRGGSELADPEVPRDCGCKPCICTVPEVSSVFIFPPKPKDVLTITLTPKVT---VVVDISKDDPEVQFSDDVEVHTAQTQPREEQFNSTFRSVSE---PIMHQDWLNGKE--RVNSAAFPAPIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKMITDFFPEDITVQPAENYKNTQPIMNTNESYFVYSKLNVQKSNWEA---------GNT----SVLHEGLHNHHTEK------SLSHSPGK |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|