Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCSSSSSSSSSCCCCCCCCCSSSSSCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCSSSSSSSSCCCCCSSSSSSSSCCCCCSSSSSSSCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCSSSSSCCCCCCCCCCCCCCCCCCCCCCCCCSCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCSSSSSCCHHHHHHHHHHHHHHHCCCCCCCCSSSSCCHHHHHHHHCCCCSSSSSCCHHHHHHHCCCCCCSSSSSCCCCSSC MDCRTKANPDRTFDLVLKVKCHASENEDPVVLWKFPEDFGDQEILQSVPKFCFPFDVERVSQNQVGQHFTFVLTDIESKQRFGFCRLTSGGTICLCILSYLPWFEVYYKLLNTLADYLAKELENDLNETLRSLYNHPVPKANTPVNLSVNQEIFIACEQVLKDQPALVPHSYFIAPDVTGLPTIPESRNLTEYFVAVDVNNMLQLYASMLHERRIVIISSKLSTLTACIHGSAALLYPMYWQHIYIPVLPPHLLDYCCAPMPYLIGIHSSLIERVKNKSLEDVVMLNVDTNTLE |
1 | 6ekkA | 0.66 | 0.58 | 16.49 | 1.33 | DEthreader | | -SR-KQNPE-TTFEVYVEVA-Y-----DPEVQRQFPEDYSDQEVLQTLTKFCFPFYV-DV-----GQNFTFVLTDIDSKQRFGFCRLSSGAKSCFCILSYLPWFEVFYKLLNILADYTTKRQENQWNELLETLHKLPIPDP-GVSVHLS------------------VHSYFTVPDTRE--LPSIENRNLTEYFVAVDVNNMLHLYASMLYERRILIICSKLSTLTACIHGSAAMLYPMYWQHVYIPVLPPHLLDYCCAPMPYLIGIHLSLMEKVRNMALDDVVILNVDTNTLE |
2 | 6ekkA | 0.70 | 0.62 | 17.69 | 3.06 | SPARKS-K | | -GSRIKQNPETTFEVYVEVAY------DPEVQRQFPEDYSDQEVLQTLTKFCFPFY------VDVGQNFTFVLTDIDSKQRFGFCRLSSGAKSCFCILSYLPWFEVFYKLLNILADYTTKRQENQWNELLETLHKLPIPDPGVSVHLSVHSY--------------------FTVPDTRELPSIPENRNLTEYFVAVDVNNMLHLYASMLYERRILIICSKLSTLTACIHGSAAMLYPMYWQHVYIPVLPPHLLDYCCAPMPYLIGIHLSLMEKVRNMALDDVVILNVDTNTLE |
3 | 6ekkA | 0.71 | 0.62 | 17.49 | 2.24 | MapAlign | | --------PETTFEVYVEVAY------DPEVQRQFPEDYSDQEVLQTLTKFCFPFY------VDVGQNFTFVLTDIDSKQRFGFCRLSSGAKSCFCILSYLPWFEVFYKLLNILADYTTKRQENQWNELLETLHKLPIPDPGVSVHL--------------------SVHSYFTVPDTRELPSIPENRNLTEYFVAVDVNNMLHLYASMLYERRILIICSKLSTLTACIHGSAAMLYPMYWQHVYIPVLPPHLLDYCCAPMPYLIGIHLSLMEKVRNMALDDVVILNVDTNTLE |
4 | 6ekkA | 0.71 | 0.63 | 17.88 | 2.07 | CEthreader | | -GSRIKQNPETTFEVYVEVAY------DPEVQRQFPEDYSDQEVLQTLTKFCFPFYVD------VGQNFTFVLTDIDSKQRFGFCRLSSGAKSCFCILSYLPWFEVFYKLLNILADYTTKRQENQWNELLETLHKLPIPDPGVSVHLSVHS--------------------YFTVPDTRELPSIPENRNLTEYFVAVDVNNMLHLYASMLYERRILIICSKLSTLTACIHGSAAMLYPMYWQHVYIPVLPPHLLDYCCAPMPYLIGIHLSLMEKVRNMALDDVVILNVDTNTLE |
5 | 3tw8A | 1.00 | 0.86 | 24.10 | 1.86 | MUSTER | | MDCRTKANPDRTFDLVLKVKC-----EDPVVLWKFPEDFGDQEILQSVPKFCFPFDVERVSQNQVGQHFTFVLTDIESKQRFGFCRLTSGGTICLCILSYLPWFEVYYKLLNTLADYLAKELENDLNETLRSLYNHPVPKAN------------------------------------TGLPTIPESRNLTEYFVAVDVNNMLQLYASMLHERRIVIISSKLSTLTACIHGSAALLYPMYWQHIYIPVLPPHLLDYCCAPMPYLIGIHSSLIERVKNKSLEDVVMLNVDTNTLE |
6 | 6ekkA | 0.71 | 0.63 | 17.88 | 6.11 | HHsearch | | -GSRIKQNPETTFEVYVEVAY------DPEVQRQFPEDYSDQEVLQTLTKFCFPFYVD------VGQNFTFVLTDIDSKQRFGFCRLSSGAKSCFCILSYLPWFEVFYKLLNILADYTTKRQENQWNELLETLHKLPIPDPGVSVHLSVHS--------------------YFTVPDTRELPSIPENRNLTEYFVAVDVNNMLHLYASMLYERRILIICSKLSTLTACIHGSAAMLYPMYWQHVYIPVLPPHLLDYCCAPMPYLIGIHLSLMEKVRNMALDDVVILNVDTNTLE |
7 | 6ekkA | 0.70 | 0.62 | 17.69 | 2.78 | FFAS-3D | | -GSRIKQNPETTFEVYVEVAYD------PEVQRQFPEDYSDQEVLQTLTKFCFPFY------VDVGQNFTFVLTDIDSKQRFGFCRLSSGAKSCFCILSYLPWFEVFYKLLNILADYTTKRQENQWNELLETLHKLPIPDPGVSVH--------------------LSVHSYFTVPDTRELPSIPENRNLTEYFVAVDVNNMLHLYASMLYERRILIICSKLSTLTACIHGSAAMLYPMYWQHVYIPVLPPHLLDYCCAPMPYLIGIHLSLMEKVRNMALDDVVILNVDTNTLE |
8 | 6ekkA | 0.68 | 0.60 | 17.14 | 1.83 | EigenThreader | | -GSRIKQNPETTFEVYVEVAYD------PEVQRQFPEDYSDQEVLQTLTKFCFPFY------VDVGQNFTFVLTDIDSKQRFGFCRLSSGAKSCFCILSYLPWFEVFYKLLNILADYTTKRQENQWNELLETLHKLPIPD-PGVSVHL-----------------SVHSYFTV--PDTRELPSIPENRNLTEYFVAVDVNNMLHLYASMLYERRILIICSKLSTLTACIHGSAAMLYPMYWQHVYIPVLPPHLLDYCCAPMPYLIGIHLSLMEKVRNMALDDVVILNVDTNTLE |
9 | 6ekkA | 0.72 | 0.64 | 18.06 | 2.71 | CNFpred | | -GSRIKQNPETTFEVYVEVAY------DPEVQRQFPEDYSDQEVLQTLTKFCFPFYVD------VGQNFTFVLTDIDSKQRFGFCRLSSGAKSCFCILSYLPWFEVFYKLLNILADYTTKRQENQWNELLETLHKLPIPDPGVSVHLSV--------------------HSYFTVPDTRELPSIPENRNLTEYFVAVDVNNMLHLYASMLYERRILIICSKLSTLTACIHGSAAMLYPMYWQHVYIPVLPPHLLDYCCAPMPYLIGIHLSLMEKVRNMALDDVVILNVDTNTLE |
10 | 3tw8A | 0.94 | 0.80 | 22.33 | 1.17 | DEthreader | | -C--KANPD-RTFDLVLKVKC----E-DPVVLWKFPEDFGDQEILQSVPKFCFPFDVERVSQNQVGQHFTFVLTDIESKQRFGFCRLTSGGTICLCILSYLPWFEVYYKLLNTLADYLAKELENDLNETLRSLYNHPVPKA-N-T-------------------------------G----LPTIESRNLTEYFVAVDVNNMLQLYASMLHERRIVIISSKLSTLTACIHGSAALLYPMYWQHIYIPVLPPHLLDYCCAPMPYLIGIHSSLIERVKNKSLEDVVMLNVDTNTLE |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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