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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.02 | 1u6g0 | 0.619 | 5.90 | 0.068 | 0.891 | 0.55 | III | complex1.pdb.gz | 13,22,64,65 |
| 2 | 0.01 | 1o6oB | 0.417 | 6.54 | 0.065 | 0.639 | 0.48 | III | complex2.pdb.gz | 21,26,56,59,62 |
| 3 | 0.01 | 2bptA | 0.509 | 6.56 | 0.055 | 0.778 | 0.47 | III | complex3.pdb.gz | 13,21,25,62,65 |
| 4 | 0.01 | 1f59B | 0.419 | 6.22 | 0.061 | 0.621 | 0.50 | III | complex4.pdb.gz | 6,9,10,15,38,39,43 |
| 5 | 0.01 | 2gl7D | 0.467 | 6.89 | 0.056 | 0.742 | 0.69 | III | complex5.pdb.gz | 12,16,18,22,28 |
| 6 | 0.01 | 1f59A | 0.416 | 6.36 | 0.067 | 0.625 | 0.45 | III | complex6.pdb.gz | 16,25,26,62,67 |
| 7 | 0.01 | 1f59B | 0.419 | 6.22 | 0.061 | 0.621 | 0.56 | III | complex7.pdb.gz | 18,22,25,26,66 |
| 8 | 0.01 | 1i7x0 | 0.453 | 7.11 | 0.050 | 0.734 | 0.44 | III | complex8.pdb.gz | 17,18,20,57,58,61,62 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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