Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340
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| SS Seq | CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHSSSSSSSSSCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCSSSSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCSSCCCSSHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCCCCC MASGRLIKFVVFELLEFAAFSIPTLVITEQFATAYQGTRARSDNTHYWLIISCSIAYVALVTLLIWVPVKVILHKKRYIYRKIKGWRPVLMMCVVLTTLPCLTFSIAVTEVQKSINGSADVLPDMLPDLPVSLVLLSLIMVDIIEKLRIYPLRGSQKSSENGHIHSTSLQHIKTVTEQVRQSPENAASPQATNSTQVSQPSGAMTRSQESVFMGPQEPSCDSGILRMMSRRDVRAELFLWSFLLWSDTIEMVRVAGHPNVYKSSWLYPVYIFSFISLLRITFTPQNPLLNSLSVLLQDLPFVFVRLGLIIALGTITPVLGLCKNILVTLSYIYFNYLTRIRIFSAFEMSPF |
1 | 5mqfT | 0.12 | 0.11 | 3.95 | 1.01 | SPARKS-K | | EALKKSINGLINKVIIQELLQENIVRGRGLLSRSVLQAQSASPI--FTHVYAALVAIINSKPQIGELILKRLILNFRKGYRRNDKCLTASKFVAHLINQHEVLCLEMLTLLLER-----------PTD--DSVEVAIGFLKECGLKLTVSPLRNILHESEIDKRVQYMIEVMFAVRKDINLVSSLDFEECAHKLLKMEFPESQTKELCNMILDCCAQQRTYEKFFRFCMLKKEYMESFEGIFKEQYDTIHRL----ETNKLRNVAKMFAHLLYTWSVLECILSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKTLQPFFEGLLPRNTRFAINFFTSIGLGGLTDELRE |
2 | 3rkoB | 0.10 | 0.07 | 2.66 | 1.36 | CNFpred | | ------LSLTMLSVVTGVGFLIHMYASWYMYSRFFAY--------TNLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGFY-KNGAAAMKAFVVTRVGDVFLAFALFILYNEL------GTLNFREMV-LMWATLMLLGGAVGKSAQLPL---------------------------------------------------------------------QTWLADAMAGTPVSALIHAATMVTAGVYLIARTHG---LFLMTVLHLVGIVGAVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVILACHHEQNIFKM |
3 | 2pffB | 0.18 | 0.16 | 5.28 | 1.09 | HHsearch | | AYSTRPLTLSHGSLE--HVLLVPTASLQEQFNKILPEPTEKKSNSALFRAVGEGNAQ--LVADDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA-------EKVFTQLNPSNTPDKDYLLSIPISCPLIGVIHYVVTAKLLPGELRSY---LKGATGHSQGLVTAVAIAETD--SWESFFSVRKYEAYPNTSLPPSIENEGVPSPML-----SIS-NLTQEQVQDY--VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGL--NLTLRKAKAPSGLDQSRLKFSNRFLP-----V----ASPFHSHLLVPASDLINKD-LVKNNVSFNAKDIQIPVYDTF |
4 | 6idpA | 0.08 | 0.08 | 3.22 | 0.49 | CEthreader | | LPLAAQGFTMPIQMVIIGIQVGLGIATTAVISRAIGAGKTEYAKQLGGLVIVIGGIGVALIALVLYLLRQPLLGLLGAPETVFAIIDHYWLWWLASAWTGAMLYFYYSVCRANGNTLLPDPIFIFTFDLGIDGAAIATIIAFGVGIAIVAPKVAQRQWTSYQWQDLNISQSLTALGHIMGPAMLSQLLPPLSSMFATKFFALVAVLAMTMSLPPMIGRMLGAKEITHIRQLVRIACQFVLGFQLLIALVTYVFATPLAELMTSETNLHLVIVPISLGALGICMLMVSVALTISALRLFAFYLPCLWLGAHFYGIEGLFIGALVGNIIAGWAAWLAYQKALRSENLYFQ--- |
5 | 6ajfA3 | 0.09 | 0.09 | 3.30 | 0.67 | EigenThreader | | AIPLVAVVLFFVFIAAALPAIIGGLAIAGALGIMRLVAEFTPVHFFAQPVVTLIGLGIAIDYGLFIVSRFREEIAEGYD--TEAAVRRTVMTSGRTVVFSAVIIVASSVPLLLFPQGFLKSITYAIIASVMLAAILSILAILGPRVDALGVTTLLKGPPDNPGFRTEPLTLVMKREDGEPITDAQIADMRAKALTVSGFTDPDNDPEKPANDSGSKDPSLENRNDAAKKIDELRALQLPIKAALMSALTLGSTMGILTWMFVDGHGAVIWGLSTDYEVFLVSRMVEARERGLITGAALILAVVAGAFVFS--DLVMMKYLAFGLLIALLLDATVMKLLGDDCWWAPRWMKR |
6 | 5doqA | 0.13 | 0.11 | 3.98 | 0.77 | FFAS-3D | | ---GTAIGLQLSNFMQLAGMETFAFFFEAIFLGIYLYTWDRFENQKKHLLLLIPVAIGSSASAMFITMVNAFMNTPQGFELKNGELVPTKVAHVLATSYMTSAFVLASIAAWHLWKGNRHIYHRKALHLTMKTAFIFSVASALLAEYQPEKLEWHFETSSHAPL------ILFGTLEEDNEVKYALEIPYALSILAHNHPAAVVT-------GLNDIPEDERPPLYIHYL--FDVMVTIGVFLMVVAAVYWLGSIFRWKWTAKNWFFGLLVAGGPLAM---------IAIEAGWYLAEVPWILRGYMKTAEGAHVDTMLVLFCLLYIVLVIASATVLIRM-----FRRNP- |
7 | 7c76B | 0.07 | 0.07 | 2.84 | 0.97 | SPARKS-K | | RLGVLKNVLAASAGGMLTYGVYLGLLQMQLILTYREVKYGNMGLPDIDSKMLMGINVTPIAALLYVLIRFMMFLAVGIYALFVSTNYPLWASMGNYITRMAQKYHEYSHYKEQDGMKQRPPYLLVFQAIFYSFFHLSFACAQLPMIYFLNHYLYDLNHTLYNVQSCGTNSHGILSGFNKTVLRTLPRSGNLCGAAYRPTEEIDLRSVGWGNIFQLPFKHVRDYRLRHLVPFFIYSGFEVLFACTGIALGYGVCSVGLERL--AYLLVAYSLGASAASLLGLLGLPRPVPLVAGAGVHLLLTFILFFVAAALWGVGSALNKTGLSTLLGILERQDFIFTIYHWWQAVAIFTV |
8 | 4he8F | 0.08 | 0.06 | 2.27 | 1.29 | CNFpred | | --------LSGFMLLIVTGVGFLIHVYAIGYMGGDPGYSRF---FAYFNLFIAMMLTLVLAYPVMFIGWEGVGLASFLLIGFW-QYADSARKAFIVNRIGDLGFMLGMAILWALY---GTLSISELK-PDLLALAGLLLFLGAVGKSAQIPL-------------MVWLPDAMAG----------------------------------------------PTPVSALIHA---ATMVTAGVYLIARSSFLYSVL-------PDVSYAIAVVGLLTAAYGALSAFGQTDIKKIVAYSTISQLGYMFLAAGVGAYWVALFHVFTHAFFKALLFLASGSVIHAL--------- |
9 | 4a01A | 0.12 | 0.09 | 3.02 | 0.83 | DEthreader | | -----L---------------------------G--FSTSPQKPALATAIFSTVSFLLGGVTSLVSGFLGMKIATYANARTETARSGAVMGFLLAANGLLVLYIAINLFKIYYG---D---DWGGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVG-----------------------------N-PEDDPRNPAVI-----------ADNVGD-----------GD-IAGMGSDLFGSYAESSCAALVVASSFNHELTAMLYLIVSSVGILVCLTT-A--IEPALKKQLVISTVLMTIGVAVVSFVALPTKSWQLFLCVAVGLWAGLIIGFVTEYYYSPQD---FA- |
10 | 1m56A | 0.07 | 0.06 | 2.56 | 0.71 | MapAlign | | NHKDIGVLYLFTGGLVGLISVAFTVYMRMELMFMCAWPSAVENCTPNGHLWNVMITGHGILMMFFVAGTSLAVASLFAPGGLGSSESGYSTDLAIFAVHLSGASSILGAINMITTFLNMRAPGMTMHKVPLFAWSIFVTAWLILLAL---------------------------------------------PVLAGAITMLLTDRNFGTTFFQPSGGGDPVLYQHILWFFGHPEVYIIVLPAFGIVSHVIATFAKGGSIELKTPMLWALGFLFLFTVGGVTLYHDTYYVVAHFHYVMLGAVFGIFAGIYFWIFATWNFVSSLGAFLSFASFLFFLGVIFYTLTRGARV-- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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