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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.02 | 2a06E | 0.554 | 3.97 | 0.050 | 0.861 | 0.74 | FES | complex1.pdb.gz | 77,85,86,87,88,90,101,102,104 |
| 2 | 0.01 | 3cwbE | 0.528 | 4.13 | 0.051 | 0.861 | 0.73 | FES | complex2.pdb.gz | 77,85,86,87,88,90,101,102,104 |
| 3 | 0.01 | 1kb9E | 0.527 | 4.28 | 0.029 | 0.861 | 0.63 | PIE | complex3.pdb.gz | 88,90,103 |
| 4 | 0.01 | 1ezvE | 0.527 | 4.28 | 0.029 | 0.861 | 0.72 | FES | complex4.pdb.gz | 77,79,85,86,90,101,102 |
| 5 | 0.01 | 3h1iR | 0.523 | 4.38 | 0.020 | 0.880 | 0.68 | FES | complex5.pdb.gz | 78,84,85,86,87,90 |
| 6 | 0.01 | 1kyoP | 0.526 | 4.30 | 0.029 | 0.861 | 0.60 | FES | complex6.pdb.gz | 79,81,82,84,88,91 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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