Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| SS Seq | CCCSSCCCCCCCCCCCCSSSSSSSSSSCCCCCSSSSCCCCSSSSCCCCSSSSSSSSCCCCCCCCSSSSSSSSSCCSSSSSSSCCCCCCCCCCCCCCCCCCSSSSSCCCCCCCCCCCCCCSSSSSSCCCCCCCSSSSSSCCCCCCCSSSSSSCCCCCCCCCCSSSSCCCSSSSSSSSSCCCCCSSSSSSSSSSSSSSSSSCCCCCCCHHHHCCCHHHHHCCSSCCCCCCCCHHHCCCCCCCCCSSSSSSCCCCCCSSSSCCC MGCIQSITCKARIRRENIVVYDVCATIDQCPTRIEETSPIVLRYKTPYFKASARVVMPPIPRHETWVVGWIQACNQMEFFNTYSDLGMSSWELPDLREGRVKAISDSDGVSYPWYGNTTETVTLVGPTNKISRFSVSMNDNFYPSVTWAVPVSDSNVPLLTRIKRDQSFTTWLVAMNTTTKEKIILQTIKWRMRVDIEVDPLQLLGQRARLVGRTQQEQPRILSRMEPIPPNALVKPNANDAQVLMWRPKRGPPLVVIPPK |
1 | 6cd2B | 0.07 | 0.07 | 2.79 | 0.77 | CEthreader | | --------------WNNIVFYSLGDVNSYQGGNVVITQRPQFITSWRPGIATVTWNQCNGPEFAYYREYIAWVVFPKKVMTQNG----YPLFIEVHNKGSWSEENTGDNDSYFFLKGYKWDERAFDAGNLCQKPGEITRLTEKFDDIIFKVALPADLPLGDYSVKIPYTSGMQRHFASYLGARFKILPRENEMLFLFKNIGGCRPSAQSLEIKHGDLSINSANNHYAAQTLSVSCDVPANIRFMLLRNTTPTYSHGKKFSV |
2 | 1lshA4 | 0.06 | 0.04 | 1.82 | 0.63 | EigenThreader | | ---QEQIGAVVSKLEQGMDVLLTKGYVV----SEVRYMCIGNLLVS---GVTTNRAN-------LSASFSS-----------------------------------LPADMKLADLLATNIELRVA------ATTSMSQHAVAIMGLTTDL--------AKAGMQT-HYKTGKIEMNARESNFKASLKSTMESIVFVRDPS-----GSRILPVLPPKMTQ----------KQIHDIMTARPVMRRKQSCSKALSRLRNAAF |
3 | 4gk9A | 0.16 | 0.11 | 3.84 | 0.42 | FFAS-3D | | LGC-----------RSGQNVVALNIKSGDGGRTLTGT----MTYVGEGFRATLAVENQWGGSSAPWHPGWVIGCATLAGTMTYAGEGPIGFKSQQADGGVYAVENQWGGSSAPW--HNGGVWVIGARDQAVVAVSIGSTDSGKTNMTY---AGEGPIGFKGNSVAGNNYAVWLLGCRSGQNVVEL--YITSTFHGSMTYSGEGPIGFRAMALPQ----------------------------------------------- |
4 | 5wlcLS | 0.09 | 0.08 | 3.25 | 0.67 | SPARKS-K | | KLDIVRLKDANASHPSHSAIQSLSFHPSKPLLLTGGYDKTLRIYHIDTNHLVTSLHLVGSP---IQTCTFYTSLSQQNIFTAGRRRYMHSWD--LSQTAKIEKFSRLYGHESTQRSFENFKVAHLQNSQTNSVHGIVLLQGNNGWINILHSTSGLWLMGCK-IEGVITDFCIDYQPISRGKFRTILIAVNAYGEVWEFDLNKNG-HVIRRWKDQGGVGITKIQVGGGTTTTCPALQISIKQNRWLAVGSESGFVNLYDRNN |
5 | 1a0rB | 0.09 | 0.07 | 2.52 | 0.97 | CNFpred | | ------------------KIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR------SSWVMTCAYAPGNYVACGGLDNICSIYNLKTREGNVSRELAGHTG--------YLSCCRFLD----DNQIVTSSGD--TTCALWDIETG-GHTGDVMSLSLAP-DTRLFVSGAC--DASAKLWDVRGMCRQTFTGH-----ESDINAICFFPNGNAFATGS--------------DDATCRLFDLRADQELMTYSHD |
6 | 4tw1B | 0.06 | 0.04 | 1.80 | 0.83 | DEthreader | | RTETVYDEKT-----------NILQNLQ-FDFIDDPTY--DKNVLLVKKQGSIHSNLKFESNWLKYPSEYHVDFQVKRNR--------KTEIL----------QLPKNKIANNHVH-WSVIALYFFASKYYVRSGFNPEFLTYLSNE------------KSNEKTQFEVTYTRNQDILILEKNKDGQRLIVTYEVDWK-------------NKTVKVVDKYSD--DNKP---YK--E------------------------ |
7 | 3fcsA | 0.05 | 0.04 | 2.00 | 0.87 | MapAlign | | TFKARQGLGASVVSWSDVIVACAPWQHWGELVLGAGGYYFLGLLAQADNVLELQMDAANEGGAYEAELAVHLPQGAHYMALSNVEFERLICNQ------------------KKENETRVVLCELNPMKNAQIGIAMLVSVGN-------------------LEEAGESVSFQLQIRSKNQNPNSKIVLLDVPVLSIHLPGQSQPSDLLCTVVQCDLQRAMVTVLAFLWLYQRPLDQFVLQSHAWFNVLPYAVPLPRGEAQV |
8 | 2qqpG | 0.12 | 0.12 | 4.31 | 0.52 | MUSTER | | TNWRDLGTGQWAQFAPGWYYSIYVLPNTYAMAEIGDRTDSVTQFRKVYKGITFEFNAPTLIDQGWWVGAHIPVKPQSETIPAAERFSAGSMTVSNAIFQPSNTVARIVWSITPLPVATVALTTGTGGTTSGKFFSVEIDGNVNSVWTFTAPASI-LAEGEPFAEEGDTTSFSMTTITADTVVYSVSSSLTGSSVIVRGVTKGSGVSITPVTVGIDTEAVNRLSIEMPALTTEEVTTPKCKESGAYIVHYKMNNPVFEMTGE |
9 | 2kxqA | 0.17 | 0.06 | 1.89 | 0.47 | HHsearch | | ----------------------------------------------------GPLGGSPPDLPEGYEQRTTQQ-GQVYFLH--TQTGVSTWHDPRVPRDLSNINCEEGPLPPGWEIRNTA-----------TG-RVYFVDHNNRTTQFTDPRLSAN--------------------------------------------------------------------------------------------------------- |
10 | 1l5gA3 | 0.08 | 0.04 | 1.69 | 0.72 | CEthreader | | ---------------PVITVNALEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPKLNFQVELLLDKLK-----QKGAIRRALFLYSR-----------------SPSHSKNMTISRG---GLMQCEELIAYLR------------DESEFRDKLTPITIFMEYRLDYRTAGLQPILANISRQAHIL----------------------------------------------------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|