Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360
| | | | | | | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHSSSSSHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHSSCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCCSSSSCCCCC MSEAVRVPSPATPLVVAAPAPEERKGKESEREKLPPIVSAGAGATAGLDRGAKGQISTFSSFISAVSPKKEAAENRSSPAHLVFPNIKNVREPPPICLDVRQKQRTSMDASSSEMKAPVLPEPILPIQPKTVKDFQEDVEKVKSSGDWKAVHDFYLTTFDSFPELNAAFKKDATASFNTIEDSGINAKFVNAVYDTLLNTPQDVQKTVLKGIINSLLREWKGPRTKDDLRAYFILLQNPQFNNTSTYVIYAHLLRQIATLVEADHHFLVHWFKKLSQKRFKQLVERLLQFISLRLFPAKPEEFPPITKCSWWIPSAAKVLALLNTANNLVHPPLIPYTDFYNSTLDHIDLMEEYHTWQNFGNSHRFSFCQYPFV |
1 | 6xjpC2 | 0.09 | 0.09 | 3.25 | 0.61 | CEthreader | | AERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGV------------ILILQSVFECTLDMINKDFPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSK---------QALLLMKLISLVYDNKISVPLYQVPQGTSNQVYLSQYLANMLSNAFPHLTSEQIASFLSALTK |
2 | 4y21A | 0.10 | 0.10 | 3.65 | 0.95 | EigenThreader | | MYRNNFPASSPERLQDLKSTVDLLTSITFFRMKVQELQSPPRASQVVKDCVKACLNSTYEYIFNNCHELYGREYQTDPAKKGEVPPEEQGPSIKNLDFWSKLITLIVSIIEEDKNSNQFPQELNLCKSADYMNLHFKVKWLYNEYVFEPFVIQWLDENEEVSRDFLHRDKKDGFQQTSEHALFSCSVVDVFSQLNQSFEIIKKLMRRFAKTISNVLLQYASKEKENNTQQLRVQLEKMFEAMGGKSGTLKELQVKLNNV-----LDELSHVFATSFQPHIEECVRQMGDILSQ----VKGTGNVPASACSSVAQDADNVLLKRVLKELWKLVMNTMERTIVLPPAVVELALDTIKQYFHAGGVGLKKTFLEKSP |
3 | 6tgbB | 0.13 | 0.11 | 3.87 | 0.72 | FFAS-3D | | -ADIVKV-------------------AIEWPGAYPKLMEID-------------QKKPLSAIIKEVCDGWSLANHEYFALQHADSSNFYITE---------------------KNRNEIKNGTILRLTTSPAQNAQQLHER-IQSSSMDAKLEALKDLLSRDVTFAQEFINLDGIQMVESGTELDMLSFTLTAFVELMDHGDTFSVAFIKKIASFVN---KSAIDISILQRSLAILESMVLNSHDLYQKVAQLIPHLQGSDQETIAVINALFLKAPDERRQEMANILASIILTHVIRAQRAINNEMAHQLYVLQVLTDIIFELRRIAFDRDYKKLPAMDFTQTPPGMLALDDAYIRIVLENSSRE-DKHECPF- |
4 | 5k7vA | 0.11 | 0.07 | 2.51 | 0.74 | SPARKS-K | | -------------------------------------------------------------------------------------------------------------------IEEVVAEMIDILAESSKKSIEELARAADNKTTEKAVAEAIEEIARLATAAIQLIEALAKNLAS--------EEFMARAISAIAELAKKAIEAIYRLADNHDTFMARAIAAIANLAVTAILAIAALASNHTTEEFMARAISAIAELAKKAIEAIYRLADNHTDKFMAAAIEAIALLATLAILASNHT---TEEFMAKAISAIAELAKKAIEAIYRLADNH----------TSPTYIEKAIEAIEKIARKAIKAIEMLAKN |
5 | 6xteA | 0.12 | 0.06 | 2.09 | 0.77 | CNFpred | | ----------------------------------------------------------------------------------------------------------------------------------VIVTLSETAAAMLR-KHTNIVAQTIPQMLAMMVDL------------------DSNAVAGESALDRMACGGKLVLPMIKEHIMQMLQNPD----WKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFLYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQ----------NQRVQAHAAAALINFTED--------CPKSLLYLDNLVK-HLHSIMVLKLQEL------------- |
6 | 4kf7A | 0.07 | 0.06 | 2.31 | 0.83 | DEthreader | | ------Q-LRE-L--L--------------------FDQKPDTTQLDALAPYITALIFQI-DLK---AIKAVCLGAAFRPVL-----------NEKS----ALVSDNSTAESPDRLRL---RDMNVVCDTLDSLVEEELA-DL---DGPKTAALSSCLQFLHLRVWAYMARC-----------INTDTRSGRLSRITANLDMLERYDLLLSAVKLFSSLVDSAKSDIVSRVTLSIAQTDVFENSRMIRDVVGIMHKLMLYTHSVTGPLAPAADYVVESFLSSSSSLRFQPLLATLLAA-FQLPDAVSELTTVLEFATILLRVADY-LN----K--ASAGIQTQLFKSACLLLVSRSFIQIAQLEVSTRFFTIN- |
7 | 4uvkA | 0.07 | 0.07 | 2.92 | 0.92 | MapAlign | | LESYSQDRDRFLQEFINLLLCCCGAIARLEVHDVHSNESSNETVGELQLLFQRQKVHEFHLLISKDSKKKSKYPPLYANFVEFMFRLMDVANDLQLLYVGTGPLIIDLLTWLSPLSVCKIRSLRYIATLTLYLFQDFLTDHVVDMVTQGIIDNIIKLWTLKVTFLKYFGLLSDSSVTVRLQVLQFFERFKERILEIALKDNLEVRLSAVQVLVEVASSISSLIFEDSVAKFFACITEPKELFDVKGAVRIGIFMNLLNSLSEKRIHILFQAAEFL-YPYFGSLIKDICKVLT--FE------GEFTHESLLLPILYVTTLHGLAYGGTHMRGQKV-AEAVQLKRLPIESSNVLASILGVFNLFAFEDWIHTGYE |
8 | 4rxhB | 0.11 | 0.10 | 3.59 | 0.51 | MUSTER | | SEIDKQIQATTKFRKLLSKERNPPIEEVIKTGVVGRFVEFLRSPHTLVQFE--TNIASGSATQTQVVIEAGAVPI-GSPEPDVREQA--AGDSPQCRDYVLSCGALRPDSRKLSMLRN--RGKTPQPDWNTIAPALPVLAKLVYSLDDEVLIDACWAISYGSNDKIQAVIEAGIPRR-MHASTSV-QTPALRSVGNIVTGDDVQTQVIINCALPCLLSLLSSNKDKEACWTISNITAGNQIQSVIDANIIPPLIHLLSHADLKTRKEACWAISNAKPDQIRYLVAQCIKPLCDLL----------ACPDNKIIQVALDGLENILKVGELDKNAASINR--YALFIEECGGMEKIHDCQTNANEE---------I |
9 | 2pffB | 0.15 | 0.13 | 4.40 | 1.40 | HHsearch | | MDAYS-------------TRPLTLSHGSLEHVLLVPTASFFIA-SQLQ-----EQFNKI------LPEPTEADDEPTTPAELVGKFLGYVGQFDQVLNLCLTEFGNDIHALAAKLLQEN--DTTLVKTKELIEELRDLYQTYH--VLVGDLIK-----F-SAETLSE-LIRTLDASNTPDKDYLLSIPISCPLTAKLLGFTPGELR-----------SYLKATGHSQGLVTAVAIAETDSWESFVSTVLFFIGVRCYESLPPSILEDLENNISNLTQEQVQDYVNKTNSH----LPAGKQVELGAKNLVVSGPPQSLYGLNTLRKAKAPSDQSRIPFSEFSNRFLPASDINKDLVKNNVSFNAKDIQIPVYTFD |
10 | 4y21A | 0.08 | 0.08 | 3.09 | 0.59 | CEthreader | | LNSTYEYIFNNCHELYGREYQTDPAKKGEVPPEEQGPSIKNLDFWSKLITLIVSIIEEDKNSYTPCLNQFPQELNVGKISAEVMWSL-FAQDMKYAMEEHDKHRLCKSADYMNLHFKVKWLYNEYVAELPTFKDRVPEYPAWFEPFVIQWLDENEEVSRDFLHGALERDKKDGFQQTSEHALFSCSVVDVFSQLNQSFEIVGHYMRRFAKTISNVLLQYADIVSKTQQLRVQLEKMFEAMGGKELDAEASGTLKELQVKLNNVLDELSHVFATSF-QPHIEECVRQMGDILSQVKGTGNVPASACSSVAQDADNVLQPIMDLLDSNLTLFAKICEKTVLKRVLKELWKLVMNTMERTIVLPPEFSKLKDHMVRE |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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