Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| SS Seq | CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC MLTRNPKTKSSLQILQDSVKWHHMAHKVNSLLDAYSGLLSNESMILAVNSSFVDPLLQFESQLKIIESSFGMLVVMPSLDKVKEMGSSYEYIEDMENLYHNILNIYENILTSLVSKDLYKLQILKEMLVWMSKDSSYLQERIMVIINKVLRFTVTKVRKYISVD |
1 | 2jcdA | 0.08 | 0.07 | 2.62 | 1.00 | DEthreader | | -----------AEPHQRQRVLTGMWIGYNERVIATEQLIAEPAFDLVHVFPGS------EQWERDIAVLVWGAVAECINALLALLADAPSLTTLHLRDETAHGSIVVEVVRELYARMNEQRALVRCLPIALEAGRRDF-SGARKMVEQLGL------------- |
2 | 5mdtA | 0.07 | 0.07 | 2.73 | 0.46 | CEthreader | | GIAEFDGILDSLEHSKTGISGSKILKLTNLSMEN-VSENAQFVASVYKYAKRAP----VTHKLGALYILDSIVRSFQDGAKKNNESFENPVDASFSGGWCKAAEITDSLVADAIQHASAHLPKILKLCDIWEKASTFPPEKLESLRSKLKDAMAL--------- |
3 | 6m6xC2 | 0.07 | 0.06 | 2.51 | 0.57 | EigenThreader | | VAAEGLIATKTPKVRGLRTIKKEILKLVETYISKALEDYMNNVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINK------DFTE---------YPEHRVEFYKLLKVINEKSFAAFLEVDAICWAFKHNNRDVEVNGL----QIALDLVKNIERMG--- |
4 | 1lihA | 0.12 | 0.10 | 3.65 | 0.86 | FFAS-3D | | ---------SSLQHCQQGFVINELRQQQSELTSTWDLMLQTRNLSRSAARMMMDASNNAKTTLAQAAAHYANFKNMTPLPAMAEA------SANVDEKYQRYQAALAELIQFLDNGNMDA---------YFAQPTQGMQNALGEALGNYARVSENLYRQTFDQS |
5 | 6w2vA | 0.05 | 0.05 | 2.48 | 0.67 | SPARKS-K | | LAKQSTDPNLVAEVVRALTEVAKTTELIREIIKVLLELASKEALQAVAELARLAEKTGDPIAKECAEAVSAAAEAVKKAADLLKRHPGSEAAQAALELAKAAAEAVLIACLLALDYKSDIAKKCIKAASEAAEEASKAAEEAQRKARDEIKEASQKAEEVKERC |
6 | 4fgvA | 0.12 | 0.12 | 4.12 | 0.69 | CNFpred | | SATQPSLIKATLETLLRFCNWIPLGYIFEPLIDTLRTRFRNVTLQCLTEIGGLQTG-YDEQLIKMFTEVLTTISNIILQMDLKATYSNSRDQEFIQNLALFLTSFFTMHLPLIENLRDFLTHGHFYLIRISQIDDREIFKICLDYWLKLVQELYEEMQSLPLND |
7 | 7a23a | 0.06 | 0.05 | 2.15 | 1.00 | DEthreader | | ---------------------RLQADKAAIKAMLVNRVGDFGLALGILGCFTLFAPNAISLICILLFIGAVGKSLHTWLPDAM-EG----PTPVSALIHAATVTAGVFMIARCSPLFEPALVITSAGAMTSFLATGYCSQLGYMIFACGNYSVSSL-VLPKNEI |
8 | 3m1iC | 0.07 | 0.07 | 2.96 | 0.61 | MapAlign | | ERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLSETVKIIANIIKTNVAVCTSMGADF-YPQLGHIYYNMLQLYRAVSMISAQVA-AEGLIATKPKVRGLRTIKKEILKLVETYISKAVLVEPLLNAVLEDYMNVPDARDAEVLNCMTTVVEKVGHMIPQGVIL- |
9 | 3nowA | 0.14 | 0.13 | 4.60 | 0.59 | MUSTER | | KNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRISGAARDGVIELITRNVHYTAL---EWAERLVEIGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVARE |
10 | 1vt4I3 | 0.13 | 0.10 | 3.62 | 0.66 | HHsearch | | -EYALHRSIVDHYNIPKTFDYSHIGHHLKN-------IEH---P-ERMTLFRMV-FLDFRFLEQKIRHDSTWNASGSILNTLQQLKICDN-DPKYERLVNAILDFLPKIEENLICSKYTDLL----RIALMAEDEA-IFEE-----------AHKQVQRGGGGG |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|