Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300
| | | | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCSSSSSCCCCCCCCCCCCCCCSSSSCCCCCCCCCCSSSSSCCCCSSSSSSSCCCCCCSSSSCCSSSCCCSSSSSSCCCHHHHHHHHHHHCCCCCCCCSHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHHCCCCCCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCC MAAGVDCGDGVGARQHVFLVSEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQLFEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDNVFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKTNNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSASLPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEKKNSKMTAAQKALAKVDKSGMKSIDTFFGVKNKKKIGKV |
1 | 3p56B | 0.92 | 0.46 | 12.88 | 0.67 | DEthreader | | -----------GARQHVFLVSEYLKD--AS----LMFVKLVNPC-----IYLFNMCLQQLFEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLI-KAD--K------------PN-CILLLKLPGLEKLLHHVT-----------KYYKYSKEKTLKWLEKKVNQTVAALKTNNV-N-------------------E-DYIRYAHGLISDYIP--KELSD------------------------------------------------------------------------------------ |
2 | 5m59A2 | 0.09 | 0.09 | 3.29 | 0.87 | MapAlign | | ---NFSPHVRPVPLELHIQSYIVFVPSRKQTRATALLFLLVQEEALALSHGVGYYHEVLIATAHLVVVMGTQFFEEHRYIDYRGVLMLPANFLPDAFVTEISTKM----IESGEDAINWATFTYFYRRLLSDLVETTLKQLIEMD-----EDEGTVAPLNAAYLRTILEIVTTEFKRIYDKAFVLVQAHFSRMNLPIDLAKDQEVILQKILSLLSAIVDINALNAMEMSQMVDSPLKQIPNFTPEVVKVANKYGINDIFDFMEQMNPEEYASLVKDLGLTQAQLAQAANFTNNKYPDITLEFEVDDPDNI-- |
3 | 3p56B | 0.94 | 0.47 | 13.13 | 1.05 | SPARKS-K | | -----------GARQHVFLVSE------YLKDASLMFVKLVNPCI-----YLFNMCLQQLFEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKP----------------NCILLLKLPGLEKLLHHVT-----------KYYKYSKEKTLKWLEKKVNQTVAALKTNNVNED---------------------YIRYAHGLISDYIPKELSD-------------------------------------------------------------------------------------- |
4 | 2x2hA1 | 0.06 | 0.05 | 2.16 | 0.65 | EigenThreader | | DGKTASSGNRLYGNAIASVNKNFRN----DAVKQEGFYGANYNYDNMYYAAVNGCAEQYSYGWFMDNVSQSYMNTGDLAYMGGPFDQVYGEVVTAFSLLQYVFG----FFQGVFGTSSLLRAHMP-----AGENNEEIVEGYQNNNFPFE--GLAVDV-----------------------DMTKGEFWTANRVGTGGDPNNRSVFEWAHDKVNQTLRERDVAEWWGNNLFSIGLDFMTVPAMMPHKIGDDINVKPDGNWPNADDPSNGQYNWKTYHPQVTLCESTRKEGIVENA------DTLTKFRRSYI |
5 | 3p56B | 0.99 | 0.49 | 13.83 | 1.18 | CEthreader | | -----------GARQHVFLVSEYLKD------ASLMFVKLVNPC-----IYLFNMCLQQLFEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADK----------------PNCILLLKLPGLEKLLHHVT-----------KYYKYSKEKTLKWLEKKVNQTVAALKTNNVN---------------------EDYIRYAHGLISDYIPKELSD-------------------------------------------------------------------------------------- |
6 | 3p56B | 0.98 | 0.49 | 13.74 | 1.11 | MUSTER | | -----------GARQHVFLVSEYLKD------ASLMFVKLVNPCI-----YLFNMCLQQLFEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADK----------------PNCILLLKLPGLEKLLHHVT-----------KYYKYSKEKTLKWLEKKVNQTVAALKTNNVN---------------------EDYIRYAHGLISDYIPKELSD-------------------------------------------------------------------------------------- |
7 | 3p56B | 0.97 | 0.49 | 13.65 | 6.40 | HHsearch | | -----------GARQHVFLVSEYLK------DASLMFVKLVNPC-----IYLFNMCLQQLFEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKAD--K--------------PNCILLLKLPGLEKLLHHVT-----------KYYKYSKEKTLKWLEKKVNQTVAALKTNNVN---------------------EDYIRYAHGLISDYIPKELSD-------------------------------------------------------------------------------------- |
8 | 3p56B | 0.92 | 0.46 | 12.78 | 1.69 | FFAS-3D | | -----------GARQHVFLVSEYL------KDASLMFVKLVNPCI-----YLFNMCLQQLFEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLI----------------KADKPNCILLLKLPGLEKLLHHVTK-----------YYKYSKEKTLKWLEKKVNQTVAALKTNNVNED---------------------YIRYAHGLISDYIPKEL---------------------------------------------------------------------------------------- |
9 | 3pufB | 1.00 | 0.59 | 16.51 | 1.96 | CNFpred | | -------------RQHVFLVSEYL----------LMFVKLVNPCSGEGAIYLFNMCLQQLFEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDNVFPNCILLLKLPGLEKLLHHVTEEKGNP----KKYYKYSKEKTLKWLEKKVNQTVAALKTNNVN--------------------EEDYIRYAHGLISDYIPKELSDDLSKY--------------------------------------------------------------------------------- |
10 | 3s4wA | 0.06 | 0.04 | 1.77 | 0.67 | DEthreader | | GLMYGSKMTNQACKGVRVVTRT---------CSKVTTF---------LKAVQMRSLILVLR--------------------------KSAVAGFLLLLKNFKVLG-----S----LP-----------S-----SQCTQS-IGVTQV--DVHSRYSAVNETFCLEIIDSLKRS-LGQQA---D-I----------------------R--LMLYDGFYDVLRSQLASSIMQTLFLIQHAEVE-KVSDSVQKQQLIRTK---------NTLLVLSQAEVLQLGVLVKLVKGLLMHMKLSTSRDFKIKGSVLDL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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