Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCSCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSCCHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCSSSSSCCCCCCCCCCSSCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC VSDRSSGIHKIQDDPQSSKFLHLNNLNSFKSTECLLLSLLHREKNKEESDSTERLQISNPGFQERCAKKMQLVNLRNRRVSANDIMGGSCHNLIGLSNMHDLSSNSKPRCCSLEGIVDVPGNSSKEASSVFHQSFPNIEGQNNKLFLESKPKQEFLLNLHSEENIQKPFSAGFKRTSTLTVQDQEELCNGKCKSKQLCRSQSLLLRSSTRRNSYINTPVAEIIMKPNVGQGSTSVQTAMESELGESSATINKRLCKSTIELSENSLLPASSMLTGT |
1 | 1kv9A | 0.05 | 0.05 | 2.37 | 0.72 | CEthreader | | ALDAKTGKAIWSQQTTDPAKPYSITGAGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPNLYLSSLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSG |
2 | 4abnA | 0.07 | 0.07 | 2.79 | 0.58 | EigenThreader | | ----------------DEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLG---SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTK |
3 | 2xd8A | 0.11 | 0.11 | 3.91 | 0.36 | FFAS-3D | | SSFHTPGTPADKAPPVAEKTIVMDDLLISSAFVYDLDETLAHYELRGEISKKIGYALAEKYDRLIFRSITRGARSASPVSATNFVEPGGTQIRVGSGTNESDAFTASA---LVNAFYDAAAAMDEKGVSSQSNGLVNRDVQGSALQSGNGVIEIAGIHIYKSMNIPFLGKYGVKYGGTTGETSPGNLGSHIGPTPENANATGGVNNDYGTNAELGAKSCGLIFQKEAAGV-VEAIGPQVQVTNGDVSVIYQGDVILGRMAMGADYLNPAAAV---- |
4 | 6zywY | 0.12 | 0.11 | 3.88 | 0.97 | SPARKS-K | | AKGVKEERNLITDEGVPQGYELNIDENQQYKDQDFLANLYLSGFNEVMQLITKDYKNMTEEFIQDYIFQKVSKVYAGFQGEEVKID-------FKDTISFKLTPYFFMVRIEQKNIKSQILNNTVLGSLVFAESFILQEGCTKEIPYFDLWNCQNDYSEKIEKMKKRILWEPLGKQISDELPKNRIFVQTG-------RKSNYGFDIPIMQASYYMHELGLRIETQRLGWFFKEMKEIQITQKMNHT--WLIFKVDSNITFNSISKDTIALEFTGD |
5 | 6u5oL | 0.04 | 0.03 | 1.63 | 0.67 | DEthreader | | FEPVNMQHVDYMLVKEFEGFIMS--F------------NN--TKIL--RLESLTELRGAILRIKQ-VPFFPETLTKYGDLGCQKLWTMAILLDVVSVKTR-LKMKEIYISLFIKVIQS--------V--MHPTP-KKVLRVINTTSAEMQFAISHVDILLKISANI---------------TLTTL--------GSERQAKVTINSGKDIAVMLEGLRILVVIIPIKS--NG-RL------------RTLRETSWNNMEIVGVVYTGLRRLLICSL |
6 | 1kv9A | 0.05 | 0.05 | 2.47 | 0.87 | MapAlign | | WSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPGFFYVLDRTNGKLISAFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFN |
7 | 1kanA | 0.09 | 0.08 | 3.00 | 0.58 | MUSTER | | ----MNGPIIMTREERMKIVHEIKELDKYGDVKAIGVSLGRQTDGSTEEAEFSHEWTTGEWKVE-----VNFYSEEILLDYASQVESDWPLTHGQFFSILPIYDSGGY----LEKVYQTAKSVEAQKFHDA------ICALIVEELFEYAGKWRNIRVQGPTTFLPSLTVQVAMAGAMLIGLHHRICYT---TSASVLT---EAVKQSD---------------LPSG---DHLCQFVMSGQLSDSEKLLESNFWNGIQEWTERHGYIVDVSKRIP |
8 | 2pffB | 0.14 | 0.13 | 4.60 | 1.23 | HHsearch | | VGEGNFGGQGNTDDYFEEQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTPSNTPDKDYLIPISCVIQLAHYVVTAKLSYLKGATGHTAVAIA---ETDSWESFIGVRCY--EAYPNTSLPPSLEDSLENNEGMLSISNQETNSHLPAGKQVEISLNGAKNLVVSGPPQSTLRKAKAPSGLDERKLKFSNRFLPVASPFHSLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSIVDCRLPVKWETTTQFKATHILDFGPGDGTGVRVIVAGT |
9 | 6n8pA2 | 0.07 | 0.07 | 2.78 | 0.46 | CEthreader | | -------------VVTSLALHSEWRLVAFGTSHGFGLFDHQQRRQVFVKCTLHPSDQLSFTGFVRTLYFADTYLKDSSRHCPSLWAGTNGGTIYAFSAEQAKEIQLMHRAPVVGILVLDGHSVPLPEPLEVAHDLSKSPDMQGSHQLLVVSEEQFKVFTLPKVSAKLKLKLTALEGSRVRRVSVAHFGYGEHHLAVLTNLGDIQVVSLPLLKPQVRYSCIRREDVSGIASCVFTKYGQGFYLISPSEFERFSLSTKWLVEPRCLVDS--------- |
10 | 6yyuA | 0.04 | 0.04 | 1.89 | 0.52 | EigenThreader | | ----------------PKLLNKFDKTIKAELDAAEKLRKRGKIEEAVNAFKELVRKYPQSPRARYGKAQCEDDLAEKRRSNEVLRGAIETYQEVASLPDVPADLLKLSLKRR---SDRQQFLGHMRGSLLTLQRLVQLFPNDTSLKNDLGVGYLLIGDNDNAKKVYEEVLSVTPNDGFAKVHYGFILKAQNKIAESIPYLKEGIESGDPGTDDASVWQR------SLYNVNGLKAQPWWTPKETGYTELVKSLERNWKLIRDEGLAVMDKAKGLFL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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