Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| SS Seq | CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCSSSSCCCHHHHCCHHHHHHHHHHHHHHHHHHSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCSSSSSSSCCCCCCC MWTLKSSLVLLLCLTCSYAFMFSSLRQKTSEPQGKVQYGEHFRIRQNLPEHTQGWLGSKWLWLLFVVVPFVILQCQRDSEKNKEQSPPGLRGGQLHSPLKKKRNASPNKDCAFNTLMELEVELMKFVSKVRNLKRAMATGSGSNLRLRKSEMPADPYHVTICEIWGEESSS |
1 | 1bm1A | 0.10 | 0.09 | 3.46 | 0.52 | CEthreader | | DPDAKKFYAITTLVPAIAFTMYLSMLL-----------GYGLTMVPFGGEQNPIYWARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEG |
2 | 3hfxA | 0.06 | 0.06 | 2.58 | 0.55 | EigenThreader | | VWGWAFEWYMVVMLFGWFWLVFGAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWIILNAICVACGL |
3 | 6kg7A3 | 0.09 | 0.08 | 2.92 | 0.54 | FFAS-3D | | --AASSVCTVWTCVIIVCKMLYQLQTIKPENFSVNCLHELNKSLLYSAPVDPTEWVGRNNLLMLAILAFEVTVYRHQEYYRGRNNLTAPVSKTIFHDITRLHLDDGLINETCFLMSVNVIGQRMDFYAMIHACWLIGVLYRRRRKAIAEV--------------------- |
4 | 4btgA1 | 0.10 | 0.09 | 3.23 | 0.67 | SPARKS-K | | -------VGKGNIDPVMYARLFFQYAQAGGALS-----------VDELVNQFTEYHQSTACEIWRKLTAYIT----GSSNRAIKADAVG-KVPPTAILEQLRTLAPSEHELFHHITTDFVCHVLVRASDLRRMLTALSSVDSKMLQTFKAKGALAPALISQHLANAATTAF |
5 | 3l1lA | 0.06 | 0.04 | 1.77 | 0.69 | CNFpred | | --IAIYGWLVTIIGALGLSMVYAKMSFLD------PSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYL-----------FPILKDPWVLT-------ITCVVVLWIFVLLNIVGPKMITRVQAVATV-------------------------------- |
6 | 1mhsA | 0.04 | 0.04 | 1.80 | 1.00 | DEthreader | | SGHFTEVLNGIGTILLILVIFTLLIVWVSSFYRS-N-PI--V-Q-I-----LEFTLA-ITIIGV-PV-GLPAVVTTMA-GA-VQKLSAIES-LAGVEIKTLGLSILKTSRQIFHRMYAYVVYRIALSIHLEIFLGLWIAILNRSVTMYAG---TWLIFIV------FTGWH |
7 | 5aexA | 0.05 | 0.05 | 2.42 | 0.82 | MapAlign | | -LLWASMMASAVCIFQWFFWGYSLAFSHNTRGNGFIGTLEFRNVLGAPSSVSSLPDILFAVYQGMFAAVTGALMLGIVYCPIACWVWNAEGWLVKLGSLDYAGGLCVHLTTIRAWYSIMSTNLAAACGGLTWMVIDYFRCGRKWTTVGLCSGIIAGLVGITPAAGFVPIWS |
8 | 4amqA1 | 0.16 | 0.16 | 5.22 | 0.44 | MUSTER | | MLIFTYKLERYIKNKILPKILVVPDRDKYQ-IKGRIPYITDIDIVNNVPEYDDTNIYQRIVDLINSFIKLIYVICGTDDRLLTEYSDEEIKIKILLNPTELVELNNVNK--KVFYINEIIWDLYKLSSEVLAGKKILRGGIEVSFQ----DVVKNNSILLLQYFVKIEYYP |
9 | 2pffB | 0.15 | 0.15 | 4.89 | 0.83 | HHsearch | | GNTDDYFEELRLYQTYGDLIKFSTLSELIRLDAEKVFTQLNILEWLENPSNDKDYLLSIPCPIGVILAHYVVTKFTRSYLKGATGHSQG---------LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPLEDSLENNEGVPSISNLTFSEKFSNRFLP |
10 | 6xbdG | 0.07 | 0.07 | 2.83 | 0.46 | CEthreader | | LGPVVAALLFAGRAGSALTAEIGLMRA-----------TEQLSSMEMMAVDPLRRVISPRFWAGVISLPLLTVIFVAVGIWGGSLVGVSWKGIDSGFFWSAQNAVDWRMDLVNCLIKSVVFAITVTWISLFNGYDAIPTSAGISRATTRTVVHSSLAVLGLDFVLTALMFG |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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