Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400
| | | | | | | | | | | | | | | | | | | | |
| SS Seq | CCCCCCCCHHHCCCCCCCCCSSSSCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCSSSSCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC MKGALGSPVAAAGAAMQESFGCVVANRFHQLLDDESDPFDILREAERRRQQQLQRKRRDEAAAAAGAGPRGGRSPAGASGHRAGAGGRRESQKERKSLPAPVAQRPDSPGGGLQAPGQKRTPRRGEQQGWNDSRGPEGMLERAERRSYREYRPYETERQADFTAEKFPDEKPGDRFDRDRPLRGRGGPRGGMRGRGRGGPGNRVFDAFDQRGKREFERYGGNDKIAVRTEDNMGGCGVRTWGSGKDTSDVEPTAPMEEPTVVEESQGTPEEESPAKVPELEVEEETQVQEMTLDEWKNLQEQTRPKPEFNIRKPESTVPSKAVVIHKSKYRDDMVKDDYEDDSHVFRKPANDITSQLEINFGNLPRPGRGARGGTRGGRGRIRRAENYGPRAEVVMQDVAPNPDDPEDFPALS |
1 | 5kcs1w | 0.10 | 0.09 | 3.36 | 1.59 | SPARKS-K | | KDGVQAQTRILFHALRKMGITIFFINK----IDQNIDLSTVYQDIKEKLS----------------AEIVIKQKVELYPNVCVTNFTESEQWDTVDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYSSTHRGPSELC-------GNVFKIEYT-KKRQRGVLHLRDSVRVSEKEKIKVTEMYTSINLCKIDRAYSGEIVILQNEFLKLNS---VLGDTKLLPQRKKIENPHPLLQTTVEPSKPESDPLLRYYVDSTTHEIILSKVQMEVISALLQEK-----YHV-EIEITEPTVIYMERPLKNAEYTIHIEVPPNPF-----WASIGLSVS--------PLPLGSGMQYESSVSLGYLNQSGIRYGCEQGLYWNVTDTPADFRMLA |
2 | 3j3ah | 0.48 | 0.08 | 2.46 | 3.60 | HHsearch | | ------------------------------------------------------------------------------------------------------------------------------------------------------EKPLEEKGEG--------GEFSVDRPIIDRPIRGRGGLGRGRGGRGRG---MGRGDGFDSR------------------------------------------------------------------------KEEGPKEMTLDEWKAIQNKDRAK----------------------------------------------------------------------------------------------------------- |
3 | 1ox4B | 0.08 | 0.08 | 3.03 | 0.52 | CEthreader | | DNLFNRGFEKPIREYIESGKPIMGIVGLQALFAPKSTGLNYIDFKLSRFDDSEKPVPEIGWNSCIPSENLFFGLDPYKRYYFVHSFAAILNSEKKKNLENDGWKIAKAKYGSEEFIAAVNKNNIFATQFHPEKSGKAGLNVIENFLKQQSPPIPNYSAEEKELLMNDYSNYGLTRRIIACLDVRTNDQGDLVVTKGDLGKPVQLAQKYYQQGADEVTRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCWYQCTIKGEILLNCIDKDGSNSGYDASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDV |
4 | 5cqrA | 0.08 | 0.08 | 2.96 | 0.72 | EigenThreader | | RKWLDKLMFKEAFECMRKLRIN---LNLIYDHNFLGNVETFIKQIHINLFFTELLVCDAMRAVMESINPHKYCLSILTSHVKKTTPELEIVLQKVHELQGNAPSDPDAVSAEEALKYLLHLVDVNELYDHSLGTYDFDLVLMVAEKSQKEYKMETNYQRFTIDKYLKRYEKAIGHLSKCGPEYLNLIKDKNLYNEALKLYSPSSQQYQDISIAYGEHLMQEHMYEPAGLMFARCGAHEKALSAFLTC------GNWKQALCVAAQLNFTKDQLVGLGRTLAGKLVEQRK--HIDAAMVLEECAQDYEEAVLLLLEGAAWEEA------LRLVYKYNRLDIIETNVKPSILE----------AQKNYMAFLDSQTATFVVQNTENLKDEVYHILKVLFLFEFDEQGRELQKAFE |
5 | 3cnfB | 0.10 | 0.09 | 3.45 | 0.48 | FFAS-3D | | -------PYTNQRGTVTNEF----ASRFRTIVATLANVVNERAVQDDMQKATRSQWLRHLETQFDNIAVAHTDHLSVVYATMSNFMLNFTNNFATHVAVVLYQSGVINGPASTYLRENEVLVVMPDYYDVVSRFANANLQMNNNRDAVRQLRALMPTLSTSQIRHAIERIAQITDVDSTDYTRSLKMQNAQIRRIRPDGTVLRYDDQIDIRWSRYFLDELQLRRVGLRLITNFNGPDPDFVPDVPEGYVAVQYAHRLFSSSLANKRNRVTYTHPPTGMAYPSPTGRPHVHMTINERAGMSKLVADNIIASVIKSNWVVDILDIEYTAEVMTPSEGYTQHVDAESIMTAPKGKLF---HLQFMDGLLRPEASGEDMR-LIYPLQPISVARSMRAIVNHNEVDRPRE-MDTGTLS |
6 | 7abiA | 0.09 | 0.09 | 3.28 | 1.50 | SPARKS-K | | ALKYMPHAVLKLLENMPMPW---EQIRYHIFVNEIPWVIEPVYISQWGSMWIMMRREKRDRRHFKRMRFPPFDDPLDYADNILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLRDSRKYVNGSTYQRWQFTLPLANQLLTDLVD-DNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDINKIIIRQPIRTYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFD-PLINPISHRHSVKSQEPLPDDDEEFELPEFVEP---FLKDTPLYTDNT-------ANGIALLWAPRPFNLR---------------SGRTRRALDIPLVKNWYREHQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATKFFQSTKLDWVEVGLQVCRQGYNML |
7 | 1u6fA | 0.14 | 0.03 | 0.99 | 0.06 | CNFpred | | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI-------NKRLKVALAASGHQRPGIAGAVGDGNGYL------------------------------- |
8 | 5x6oC | 0.08 | 0.05 | 1.85 | 0.67 | DEthreader | | ----------------------LDNKYI---CFVDHFPIDQALVYFDLKRRSLPEALKYDNK---------------------------------------------------------NPNRSDSHNSEDTLTLTTSNDVFD-TLLL--K--DI--S----D--DYSLRI-M----ILPVLLRLGFILGYSSKTILD-FQYIIPYAIEIAIKLLKKSRQIFALLLFLYIYLPYTLAE----------RHGSKYKNIWEYAPLRHLNDLSILITALQDDVKKMQSFLMRKKTFFTLAQLNEAKWDKPYYSIG-------FEYRAISYFL-----NTAKVRENL----------PK-ITFWLDI----A--S-------ISE-R-----------MLS-ATDICSHVEAIMHIL |
9 | 4yddA | 0.05 | 0.05 | 2.36 | 0.89 | MapAlign | | ATWEEALDMIADKCVDTIKNHAPDCISVYSPVPAVSPVSFSAGHRFAHDGALAMAMAHVIIKEKLYDAHSLKEQTDLSYLVRSDTKRFLREADVVAGGSKDKFYFWNAKTGKPVLKSRLMADNTPEKAAKITGVTAKAITELAREFATAKPSMIICGGGTQHWYYSDVLLRAMHLLTALTGTEGTNGGGDTEKYLRDSITTGQMPNMPEQGRDPKVFFVYRGNWLNLELIVDINIRMDSTALYSDVVLPSAHWYEKLD----LNVTSEHSYINMTEPAIKPMWESKTDWQIFLALAKRVEMAAKRKKYEKFNDEKFKWVRDLSNLWNQMTMDGKLAEDEAAAQYILDNAPQSKGITIQMLREKPQRFKSNWTSPLQRGGPSIEMSPLDAKPLGIKDNDWVEAWNNHGKVICRV |
10 | 1zvoC | 0.07 | 0.06 | 2.62 | 0.99 | MUSTER | | GLVKPSETLSIVSGGPIRRTGYYWG-----IRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSRSMSAA-GNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPTGYHPTSVYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWRQGE--VVQHTASKSKKEIFRWPESPKAQASSVPT-----AQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFT-----FVVGSDLKDAHLTWEVAGKVP----------TGGVEEGLLERHSNGSQSQHSR------LTLPRSLWNAGTSNHPSLPPQRLMALREPAAQAPVKLSLNLLASSDPPEASGFSPPN |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|