Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200
| | | | | | | | | | |
| SS Seq | CCSSSSSCCCCCCCSSSSSCCCCSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSSSSSSCCCCHHHHHHHHHCCCCCCSSSSSSCCCCCHHHHHHHHHHHCCCSSSSSCCCCCCCCCCCCCCCCSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCSSSSSSSSCCSSSSSCC NYSVLLDLPGPSPSTVTLSSSGQCFHPNGQPCSEEARKDSSQDLLYSYAAYSAKGTLKAEVIDVSYGMADDLKRIRKIKNVTNQIALLKLGKLPLLYKLSSLEKAGFGGVLLYIDPCDLPKTVNPSHDTFMVSLNPGGDPSTPGYPSVDESFRQSRSNLTSLLVQPISAPLVAKLISSPKARTKNEACSSLELPNNEIRVVSMQVQTVTKLKTVT |
1 | 4tweA | 0.24 | 0.24 | 7.39 | 1.33 | DEthreader | | TYEVLLSFPSQQPNVVDIVGPGIIHSCHRT-EENV-TGEQGGDVVQPYAAYAPSGTPQGLLVYANRGAEEDFKELQTGIKLEGTIALTRYGGVGRGAKAVNAAKHGVAGVLVYTDPADINDTWYLPGVERGSYYEYFGDPLTPYLPAVPSSFRVNVSGFPPIPTQPIGFQDARDLLCNLNG--QGALGCHYRGFRPADSQVNVSVYNRLELRNSS |
2 | 4tweA3 | 0.24 | 0.24 | 7.52 | 2.90 | SPARKS-K | | TYEVLLSFPSQQPNVVDIVGPGIIHSCHRT-EENVTGEQGGPDVVQPYAAYAPSGTPQGLLVYANRGAEEDFKELQTQIKLEGTIALTRYGGVGRGAKAVNAAKHGVAGVLVYTDPADINDGLSSYLPPSGVYYEYFGDPLTPYLPAVPSSFRVDVSGFPPIPTQPIGFQDARDLLCNLNGTWQGALGCHYRLGPPADSQVNVSVYNRLELRNS- |
3 | 4tweA | 0.24 | 0.24 | 7.53 | 1.74 | MapAlign | | TYEVLLSFPSEQPNVVDIVGPGIIHSCHRT-EENVTGEQGGPDVVQPYAAYAPSGTPQGLLVYANRGAEEDFKELQTGIKLEGTIALTRYGGVGRGAKAVNAAKHGVAGVLVYTDPADIPNSWYLPPSGVRGYYEYFGDPLTPYLPAVPSSFRVNVSGFPPIPTQPIGFQDARDLLNGTLAPATWQGALYRLGDFPADSQVNVSVYNRLELRNSS |
4 | 4tweA3 | 0.24 | 0.24 | 7.40 | 1.36 | CEthreader | | TYEVLLSFPSQQPNVVDIVGPTGIIHSCHRTEENVTGEQGGPDVVQPYAAYAPSGTPQGLLVYANRGAEEDFKELQTQIKLEGTIALTRYGGVGRGAKAVNAAKHGVAGVLVYTDPADINDGWYLPPSGVERGYEYFGDPLTPYLPAVPSSFRVDVSGFPPIPTQPIGFQDARDLLCNLNGTWQGALGCHYRLGPGFRSQVNVSVYNRLELRNS- |
5 | 4tweA3 | 0.24 | 0.24 | 7.53 | 2.26 | MUSTER | | TYEVLLSFPSQQPNVVDIVGPGGIIHSCHRTEENVTGEQGGPDVVQPYAAYAPSGTPQGLLVYANRGAEEDFKELQTQIKLEGTIALTRYGGVGRGAKAVNAAKHGVAGVLVYTDPADINDGLSSPPSGVGSYYEYFGDPLTPYLPAVPSSFRVDVSGFPPIPTQPIGFQDARDLLCNLNGTWQGALGCHYRLGPPADSQVNVSVYNRLELRNS- |
6 | 1z8lA1 | 0.24 | 0.24 | 7.39 | 4.50 | HHsearch | | HYDVLLSYPNKHPNYISIINEGNEFNTSLFEPPPGYE--NVSDIVPPFSAFSPQGMPEGDLVYVNYARTEDFFKERDKINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDPADYFAGWNLPGGGVQGNLNGAGDPLTPGYPANEYAYRRGAVGLPSIPVHPIGYYDAQKLLEKMGGSWRGSLKVPYNVGPGFTQKVKMHIHSTNEVTRI- |
7 | 4tweA3 | 0.25 | 0.25 | 7.65 | 2.28 | FFAS-3D | | TYEVLLSFPSQQPNVVDIVGPGGIIHSCHRTEENVTGEQGGPDVVQPYAAYAPSGTPQGLLVYANRGAEEDFKELQTQGKLEGTIALTRYGGVGRGAKAVNAAKHGVAGVLVYTDPADFPNSWYLPPSGVGSYYEYFGDPLTPYLPAVPSSFRVDLANFPPIPTQPIGFQDARDLLCNLNGTLAPATWQGYRLGPPADSQVNVSVYNRLELRN-- |
8 | 1z8lA1 | 0.21 | 0.20 | 6.51 | 1.87 | EigenThreader | | YDVLLSYPNKTHPNYISIINEDGNTSLFEPPPPG---YENVSDIVPPFSAFSPQGMPEGDLVYVNYARTEDFFKLERDMNCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDPADYFAPGPGGGVQRGNILNLNGDPLTPGYPANEYAYRRGAVGLPSIPVHPIGYYDAQKLLEKMGGSAPPDSSWRYNVGPGFTQKVKMHIHSTNEVTRI- |
9 | 4mcsA | 0.23 | 0.23 | 7.13 | 2.85 | CNFpred | | HYDVLLSYPNTHPNYISIINENEIFNTSLFEPPPPGYE-NVSDIVPPFSAFSPQGMPEGDLVYVNYARTEDFFKLERKINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDPADYFA-WNLPG-GNILNLNGAGDPLTPGYPANEYAYRRGAVGLPSIPVHPIGYYDAQKLLEKMG-SWRGSLKVPYNVGPGSTQKVKMHIHSTNEVTRIY |
10 | 4tweA3 | 0.24 | 0.24 | 7.39 | 1.33 | DEthreader | | TYEVLLSFPSQQPNVVDIVGPGIIHSCHRT-EENVTGEQGGPDVVQPYAAYAPSGTPQGLLVYANRGAEEDFKELQTGIKLEGTIALTRYGGVGRGAKAVNAAKHGVAGVLVYTDPADINDTWYLPGVERGSYYEYFGDPLTPYLPAVPSSFRVNVSGFPPIPTQPIGFQDARDLLCNLNG--QGALGCHYRGFRPADSQVNVSVYNRLELRNS- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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