>Q562F6 (159 residues) STVSEQADKENNLENEKMVKNKPDFYTKAFRSLSEIHSPNIQDSSFDSVREGLVPLSVSS GKNVIIKENFALECSPAFQVSDDEHEKMNKMKFKVNRRTQKSGIGDRPLQDLSNTSFVSN NTAESENKSEDLSSERTSRRRRCTPFYFKEPSLRDKMRR |
Sequence |
20 40 60 80 100 120 140 | | | | | | | STVSEQADKENNLENEKMVKNKPDFYTKAFRSLSEIHSPNIQDSSFDSVREGLVPLSVSSGKNVIIKENFALECSPAFQVSDDEHEKMNKMKFKVNRRTQKSGIGDRPLQDLSNTSFVSNNTAESENKSEDLSSERTSRRRRCTPFYFKEPSLRDKMRR |
Prediction | CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCSSSCCCCCSSSSCCCCCCCCCSSSCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCC |
Confidence | 952245577876544444405850678887777753487555553122331465403227874364226665667416528436777641566656443346788631455304542236877742223466667763224456765689545665239 |
H:Helix; S:Strand; C:Coil | |
Sequence |
20 40 60 80 100 120 140 | | | | | | | STVSEQADKENNLENEKMVKNKPDFYTKAFRSLSEIHSPNIQDSSFDSVREGLVPLSVSSGKNVIIKENFALECSPAFQVSDDEHEKMNKMKFKVNRRTQKSGIGDRPLQDLSNTSFVSNNTAESENKSEDLSSERTSRRRRCTPFYFKEPSLRDKMRR |
Prediction | 846654455554156353264435113500431373244625534254125431313134544221455232632221414762254157252534544564533443134134343245444545554664646445444413414154451454368 |
Values range from 0 (buried residue) to 8 (highly exposed residue) | |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | 20 40 60 80 100 120 140 | | | | | | | | |||||||||||||
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SS Seq | CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCSSSCCCCCSSSSCCCCCCCCCSSSCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCC STVSEQADKENNLENEKMVKNKPDFYTKAFRSLSEIHSPNIQDSSFDSVREGLVPLSVSSGKNVIIKENFALECSPAFQVSDDEHEKMNKMKFKVNRRTQKSGIGDRPLQDLSNTSFVSNNTAESENKSEDLSSERTSRRRRCTPFYFKEPSLRDKMRR | |||||||||||||||||||
1 | 1w8nA1 | 0.03 | 0.03 | 1.45 | 0.54 | CEthreader | -------------------------------------GEPLYTEQDLAVNGREGFPNYRIPALTVTPDGDLLASYDGRPTGIGAPGPNSILAGQTTAPIKGFSDPSYLVDRETGTIFNFHVYSQRQGFAGSRPGTDPADPNVLHANVATSTDGGLTWSH | |||||||||||||
2 | 3rauA | 0.06 | 0.06 | 2.53 | 0.63 | EigenThreader | AVKKFVLKNYLQSRVPMGQACILYNLGALHSMLGAMDKRVSEEGMKVSCTHFQCAAGAFAYLRMSRQILTLNVNLMLGQAQECLLEKSMLDNQVVDYYKEACRALENLVQMKIYYFAAVAHLHMGKQAEEQQKFGERVAYFQSALDKLNEAIKLAVQDA | |||||||||||||
3 | 4bmlA | 0.09 | 0.09 | 3.31 | 0.34 | FFAS-3D | ATALKLFSGETAFNNASIF-------KGLVRSYKSKQFMFTGKLSAAGIKANEKTLVMDDLLVSSQFVYSLDEIFSQYSTRAEVSKQATHYDERIARVLAKASAEASPVTGEPGGFHVNIGAGNTNDAQAIDERSAPQEGR----VAVLSPRQYYSLIS | |||||||||||||
4 | 5lj3W | 0.05 | 0.05 | 2.32 | 1.27 | SPARKS-K | KFTPSIVIDAPQYYVDHFNGKYNVDKCVILRDL------QLETDSESMPSSLKHLTHILDLTNNDLIMIPDLSRRDDIHTLLLGRNNIVEVDGRLLPMNVQNLTSNNSIRRFEDLQRLRRAPRTLKNTLIGNQVCHLANYREHVLRLVPHLEVTAEERK | |||||||||||||
5 | 3nrmA | 0.24 | 0.05 | 1.57 | 0.44 | CNFpred | GTVYRELQKLSKFDEQRTA----TYITELANALSYCHS------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 6ifkA | 0.08 | 0.07 | 2.72 | 0.83 | DEthreader | AEFE-FNVQIDSLLNDRLAAF--LAS-FD--LSGIQDFIYNIGKQLKARSLYLDFEYISDKLTQFEKDFNYVAFGWGSFAKDIMSPESYRQVYQKASRMKKSRY------------THVFVGDYVINQFASDFVEEIYDLQIFFLLEELT--RE--RD- | |||||||||||||
7 | 1vt4I | 0.03 | 0.03 | 1.85 | 0.87 | MapAlign | AIFEEAHKQVQGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | |||||||||||||
8 | 4k0mC | 0.09 | 0.09 | 3.38 | 0.62 | MUSTER | YTIDEAARTAKFDETVEVHAKRSDQNVRGTVSLPHGLGKQVRIAKGEKIKEAEEAGADYVGGEEIIQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||||||
9 | 6tgbA1 | 0.12 | 0.12 | 4.19 | 0.68 | HHsearch | GGGFPEIIMPGDVRNDIYITLQGDFYNTTQRNVEVVCGKTLPNAICVGAGDK-PMNEYRSVVYYQVKQPRWMETVKVAVPIEDMQRIHLRFMF-RHRSSLESK-DKGEKNFAMSYVKLMK---EDGTTLHDGFHDLDSKKMEDASAYLTLPSYRHHVEN | |||||||||||||
10 | 1okiA | 0.07 | 0.06 | 2.37 | 0.44 | CEthreader | RVRSIIVSAGPWVAFEQSNRGEMFILEKGEYPRWNTWSSSYRSDRLMSFRPIKMDAQEHKISLFEGANFKGNTIEIQGDDAPSLWVYG----------------------FSDRVGSVKVSSGTWVGYQYPGYRG---YQYLLEPGDFRHWNEWGAFQP | |||||||||||||
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Top 10 structural analogs in PDB (as identified by
TM-align)
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Top 5 enzyme homologs in PDB
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Template proteins with similar binding site:
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References: | |
1. | Wei Zheng, Chengxin Zhang, Yang Li, Robin Pearce, Eric W. Bell, Yang Zhang. Folding non-homology proteins by coupling deep-learning contact maps with I-TASSER assembly simulations. In preparation, 2020. |