>Q53RT3 (170 residues) VPGAAPSHLPKEIVFANSMGKGYYLKGKIGKVPVRFLVDSGAQVSVVHPNLWEEVTDGDL DTLQPFENVVKVANGAEMKILGVWDTAVSLGKLKLKAQFLVANASAEEAIIGTDVLQDHN AILDFEHRTCTLKGKKFRLLPVGGSLEDEFDLELIEEDPSSEEGRQELSH |
Sequence |
20 40 60 80 100 120 140 160 | | | | | | | | VPGAAPSHLPKEIVFANSMGKGYYLKGKIGKVPVRFLVDSGAQVSVVHPNLWEEVTDGDLDTLQPFENVVKVANGAEMKILGVWDTAVSLGKLKLKAQFLVANASAEEAIIGTDVLQDHNAILDFEHRTCTLKGKKFRLLPVGGSLEDEFDLELIEEDPSSEEGRQELSH |
Prediction | CCCCCCCCCCCSSSSSSCCCCCSSSSSSSCCSSSSSSSSCCCCCSSSCHHHHHHHCCCCCCCCCCCCSSSSCCCCCSSSSSSSSSSSSSSCCSSSSSSSSSCCCCCCCSSSCHHHHHHCCCSSSCCCCSSSSSCCSSSSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCC |
Confidence | 99654467982478850579843899999999990999689983674999999858864334443102899179987999999999999989999999999089987678618999762929975799899938828984278744555442210146678743122579 |
H:Helix; S:Strand; C:Coil | |
Sequence |
20 40 60 80 100 120 140 160 | | | | | | | | VPGAAPSHLPKEIVFANSMGKGYYLKGKIGKVPVRFLVDSGAQVSVVHPNLWEEVTDGDLDTLQPFENVVKVANGAEMKILGVWDTAVSLGKLKLKAQFLVANASAEEAIIGTDVLQDHNAILDFEHRTCTLKGKKFRLLPVGGSLEDEFDLELIEEDPSSEEGRQELSH |
Prediction | 75653465434312122445432204030464413100214112010245005416455363444242204124444130322240303046341312012154452300001200452402021463202044761412336453656353513574462575455268 |
Values range from 0 (buried residue) to 8 (highly exposed residue) | |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | 20 40 60 80 100 120 140 160 | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SS Seq | CCCCCCCCCCCSSSSSSCCCCCSSSSSSSCCSSSSSSSSCCCCCSSSCHHHHHHHCCCCCCCCCCCCSSSSCCCCCSSSSSSSSSSSSSSCCSSSSSSSSSCCCCCCCSSSCHHHHHHCCCSSSCCCCSSSSSCCSSSSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCC VPGAAPSHLPKEIVFANSMGKGYYLKGKIGKVPVRFLVDSGAQVSVVHPNLWEEVTDGDLDTLQPFENVVKVANGAEMKILGVWDTAVSLGKLKLKAQFLVANASAEEAIIGTDVLQDHNAILDFEHRTCTLKGKKFRLLPVGGSLEDEFDLELIEEDPSSEEGRQELSH | |||||||||||||||||||
1 | 5yq8A | 0.26 | 0.19 | 5.81 | 1.00 | DEthreader | -----------------KVTM-LYVPCTINQVLVKAFVDSGAQNSIMNKRTAERCGLMRL-VDVRMGVAVG---VGRQEICGRIMTPVNLAGMYIPFAFYVIEDQAMDLIIGLDQLKRHQMMIDLKHNCLTIDNINVPFL-PE-NDL----------------------- | |||||||||||||
2 | 5yq8A | 0.26 | 0.18 | 5.64 | 1.73 | SPARKS-K | -----------------AKVTMLYVPCTINQVLVKAFVDSGAQNSIMNKRTAERCGLVRMRGVAVQEICG-----------RIHMTPVNLAGMYIPFAFYVIEDQAMDLIIGLDQLKRHQMMIDLKHNCLTIDNINVPFLPE-NDLPALA-------------------- | |||||||||||||
3 | 3s8iA | 0.19 | 0.12 | 3.99 | 0.79 | MapAlign | ---------------------MLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCN--IMRLVDRWAGVA-----KGQRIIGRVLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIGTTQTYFL------------------------------ | |||||||||||||
4 | 5yq8A | 0.25 | 0.19 | 5.85 | 0.70 | CEthreader | -----------------AKVTMLYVPCTINQVLVKAFVDSGAQNSIMNKRTAERCGL--MRLVDVRMRGVAVGVGRQEICGRIHMTPVNLAGMYIPFAFYVIEDQAMDLIIGLDQLKRHQMMIDLKHNCLTIDNINVPFLPENDLPALA--------------------- | |||||||||||||
5 | 5yq8A | 0.25 | 0.19 | 5.85 | 1.52 | MUSTER | -----------------AKVTMLYVPCTINQVLVKAFVDSGAQNSIMNKRTAERCGLM--RLVDVRMRGVAVGVGRQEICGRIHMTPVNLAGMYIPFAFYVIEDQAMDLIIGLDQLKRHQMMIDLKHNCLTIDNINVPFLPENDLPALA--------------------- | |||||||||||||
6 | 5yq8A | 0.25 | 0.19 | 6.01 | 2.67 | HHsearch | -----------------AKVTMLYVPCTINQVLVKAFVDSGAQNSIMNKRTAERCGLM-RLVDVRMRGV-AVGVGRQEICGRIHMTPVNLAGMYIPFAFYVIEDQAMDLIIGLDQLKRHQMMIDLKHNCLTIDNINVPFLPE-NDLPALA-------------------- | |||||||||||||
7 | 5yq8A | 0.25 | 0.19 | 5.83 | 1.77 | FFAS-3D | --------------------TMLYVPCTINQVLVKAFVDSGAQNSIMNKRTAERCGLMRLVDVRMRGVA--VGVGRQEICGRIHMTPVNLAGMYIPFAFYVIEDQAMDLIIGLDQLKRHQMMIDLKHNCLTIDNINVPFLPENDLPALA--------------------- | |||||||||||||
8 | 1ibqA | 0.12 | 0.11 | 3.95 | 0.98 | EigenThreader | -------SKGS-AVTTPQNNDEYLTPVTVGKSTLHLDFDTGSADLWVFSSEQTYTPSSSATSGYSW---DISYGDGSSASGDVYRDTVTVGGVTTKQAVEAASDTANDGLLLADTVKSQLDSTDADYWGFSTDGFSAIADT-GTTLILLDDEIVSAYYEQVSGAQESYEA | |||||||||||||
9 | 4rghA | 0.23 | 0.15 | 4.78 | 1.92 | CNFpred | ---------------------MLYINCKVNGHPVKAFVDSGAQMTIMSQACAERCNIMR--------LVDRRW-GTQKIIGRVHLAQVQIEGDFLPCSFSILEEQPMDMLLGLDMLKRHQCSIDLKKNVLVIGGSQTTFLP----------------------------- | |||||||||||||
10 | 3s8iA | 0.20 | 0.14 | 4.52 | 1.00 | DEthreader | -----------------V-TM-LYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRL-VDRRWAGVAK-----GQRIIGRVHAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIGGTQTYFL-PE-GEL----------------------- | |||||||||||||
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Top 10 structural analogs in PDB (as identified by
TM-align)
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Top 5 enzyme homologs in PDB
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Template proteins with similar binding site:
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References: | |
1. | Wei Zheng, Chengxin Zhang, Yang Li, Robin Pearce, Eric W. Bell, Yang Zhang. Folding non-homology proteins by coupling deep-learning contact maps with I-TASSER assembly simulations. In preparation, 2020. |