Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| SS Seq | CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHC MGSPGASLGIKKALQSEQATALPASAPAVSQPTAPAPSCLPKAGQVIPTLLREAPFSSVIAPTLLCGFLFLAWVAAEVPEESSRMAGSGARSEEGRRQHAFVPEPFDGANVVPNLWLHSFEVINDLNHWDHITKLRFLKESLRGEALGVYNRLSPQDQGDYGTVKEALLKAFG |
1 | 5i9dA | 0.10 | 0.10 | 3.81 | 0.57 | CEthreader | | IDGLCKAGKLDEALKLFEEMVEKGIKPVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYSLIDGLCKAGKLDEALKLFEEMVEKGIKPNVVTYSTLIDGLAGKLDEALKLFEMKGIKPNVVTYNTLIDGLC |
2 | 1qrjB | 0.09 | 0.08 | 3.05 | 0.80 | EigenThreader | | ---QMKDLQAIKQEVSQAAPGSIRLAVQQFDPSSLVASLHHQQLDSLISEAETRGITGYGLRREYQQLWLAAFAALPGSA-----------------KDPSWASILQGLEEPYHAFVERLNIALDNGLPKDPILRSLAYSNANKECQKLLQARGH-TNSPLGDMLRACQ---T |
3 | 4x3hA | 0.14 | 0.06 | 2.17 | 0.67 | FFAS-3D | | ----------------------------------------------------------------------------------------------GPLGSPEFPGLDTQIFEDPREFLSHLEEYLRQVGGSEEYWLSQIQNHMNGPAKKWWEFK-QGSVKNWVEFKKEFLQYSG |
4 | 4x3hA | 0.12 | 0.05 | 1.85 | 0.74 | SPARKS-K | | -----------------------------------------------------------------------------------------------GPLGSPEFPGLDTQIFDPREFLSHLEEYLRQVGGSEEYWLSQIQNHMNGPAKKWWEFKQGSV-KNWVEFKKEFLQYSE |
5 | 6tatA | 0.13 | 0.05 | 1.80 | 0.51 | CNFpred | | -------------------------------------------------------------------------------------------------------VRFSGQRDAVDEFINAVETYKEVEGISDKDALKGLPLLFKSIAVVWWKGVR-RDAKTWSDALQLLRDHFS |
6 | 4a01A | 0.03 | 0.03 | 1.61 | 0.83 | DEthreader | | ----------E--STSPQACKTCKDWGFGMLLIVSVGLVCLLTTLFATDFF-EI-KAVKEIE-PALKKQLVISTVLMTIGVAVVSFLPTSDVK-SWQLFLCAVLWA-IV--IIIFAIAISIFVSFAGAVAALGMLST--G------TT-AIGKGFAIGSAASSLVSGVQIIS- |
7 | 6ssjA | 0.07 | 0.07 | 2.87 | 0.79 | MapAlign | | ARYKSFSIKMLKDMKEGVKQYGPNSPYMRTLLDSIAHGHRLIPYDWEILAKSSLSQFLQFKTWWIDGVQEQVRRNRAANPPVNIDADQLLGIGQNWSSACPSFNTVRQGSEPYPDFVARLQDVAQKSKARKVIVELMAYENANPECQSAIKPLKGKVSDVISEYVKACDGIGG |
8 | 1st6A | 0.12 | 0.12 | 4.10 | 0.54 | MUSTER | | LCAGKERREILGTCKT-MTDQLADLRARGQGATPMAMQKAQQVSQGLDLLTAKVENAARKLEAMTNSKQAIAKKIDAAQNWLADPNGGSEGEEHIRGIMSEARKELCEEPKERDDILRSLGEISALT--AKLSDLRRHGKGDSPEARALAKQIATSLQNLQSKTNRAVANTRP |
9 | 6gseA1 | 0.13 | 0.05 | 1.81 | 1.72 | HHsearch | | ------------------------------------------------------------------------------------------------------SPGLDTQFEDPREFLSHLEEYLRQVGGSEEYWLSQIQNHMNGPAKKWWEFKQ-GSVKNWVEFKKEFLQYSE |
10 | 2vq2A | 0.05 | 0.05 | 2.38 | 0.56 | CEthreader | | IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKAAAYEYEAQLQANFPYSEELQTVLT----- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|