Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420
| | | | | | | | | | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC MDSLWGPGAGSHPFGVHNSRLSPDLCPGKIVLRALKESGAGMPEQDKDPRVQENPGDQRRVPEVTGDAPSAFRPLRDNGGLSPFVPGPGPLQTDLHAQRSEIRYNQTSQTSWTSSCTNRNAISSSYSSTGGLPGLKRRRGPASSHCQLTLSSSKTVSEDRPQAVSSGHTQCEKVAEIAPGQTLALRNDSSRSEASRPSTRKFPLLPRRRGEPLMLPPPVELGYRVTAEDLDWEKEAAFQCIKSALQVEDKAISDCRPSRPSHTLSSLATGASGLPAVSKAPSMDAQQERHKSQDCLGLVAPLASATEVPSTAPMSGEKHRPPGPLFSSSDPLPATSSHSQDSAQVTSLIPAPFPAASMDAGMRRTRPGTSAPAAAAAAPPPSTLNRTLGSLLEWMEALHISGPQPQLQQVPRGQNQRSQTSRTSSCPK |
1 | 2nbiA | 0.11 | 0.11 | 3.93 | 1.44 | SPARKS-K | | QPSECADVLEECPICFLPYSDAPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTP--PEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPD--CTAVGRPDCDVLPFPNNLGCPACCPFSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPS-----QCAEVIEQCPIDE---CFLPYGDSSRPLDTDPAVNRPDCDVLPTPQNIFECRPDNTPSPDGSPPICSPTMPSPEPSSQPSDCGEVIEECPIDACFLPKSDRPPDCTAVGRPDCNVLPFPNNI-GCPSCCPFECSPNPTPSPDGSPPNCSPTMLPSSQPSECADVLELCPYDTCFLPFDDSSRPPPSVNRPDCDKLST---AIDFTCPTCCPTQCRPDNPMFSPSPDGSPPVC |
2 | 2nbiA | 0.11 | 0.11 | 4.02 | 1.08 | MUSTER | | LNPSSQPSECADVLEECPIDECFLPYSDASRPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAVGRPDCDVLPFPNGCPACCPFECSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPSQCAEVIEQCPI--DECFLPYGDSSRPLDCTDPAVNRPDCDVLPTPQ--INCPACCAFECRPDNPMFTPSPDGSPPICSPTMMPSPEPSSQPSDCGEVIEECPIDACFLPKSDSARPPVLPFPNNIGCPSCCPFECSPTPSPDGSPPNCSPTMLPSPSPSAVTVPTPAPSSAPTRQPSSQPTGPQPSSQPSECADVLELCPYDTCFLPFDDSSRPPDCTDPSVSTAIDFTCPT |
3 | 1q9hA | 0.05 | 0.05 | 2.29 | 0.51 | CEthreader | | ----------------QAGTATAENHPPLTWQECTAPGSCTTQNGAVVLDANWRWVHDVNGYTNCYTGNTWDPTYCPDDETCAQNCALDGADYEGTYGVTSSGSSLKLNFVTGSNVGSRLYLLQDDSTYQIFKLLNRLYFVAMDADGGVSKYPNNKAGAKYGTGYCDSQCPRDLKFIDGEANVEGWQPSTGIGDHGSCCAEMDVWEANSISNAVTPHPCDTPGQTMCSGDDCGGTYSNDRYAGTCDPDGCDFNPYRMGNTSFYGPGKIIDTTKPFTVVTQFLTDDGTDTGTLSEIKRFYIQNSNVIPQPNSDISGVTGNSITTEFCTAQKQAFGDTDDFSQHGGLAKMGAAMQQGMVLVMSLWDDYAAQMLWLDSDYPTDADPTTPGIARGTCPTDSGVPSDVESQSPNSYVTYSNIKFGPINSTFT- |
4 | 4rlvA | 0.07 | 0.07 | 2.93 | 0.78 | EigenThreader | | HNADVQSKVNRTTESGFTPLHIAAHYGNVNVATLLLNRGAAVDFTARNGITNTNVGGQIDAKTRDGLTPLHCAARSGHDQVVELLLERGAPLLARTKNGLSPLHAAQGDHVDDVTLDYLTALHVAAHCGHYRVTKLLLDKRANPNARALNGFTPLHIACKKNRIKVELLVKYIQAITESGLTPIHVAAFGHLNIVLLLLQNGASPDVTNIRGETALHAARAGQ---VEVVRCLLRNPLHIASRLGKTEIVQLLLQH------AHPDAATTNGYTPLHISAREGQVDVASVLLEAGAAHSLATKKGFTPLHVAAKYGSLDVAKLLLQRRAAADSAGKNGLTPLHVAAHYPHATAKNGYTPLHIAAKKNQQIASTLLNYGAETNIVTKQGVTPLHLASQEGHTDVTLLLDKGANIHSTKSGLTSLHLAAQ |
5 | 2xd8A | 0.10 | 0.07 | 2.60 | 0.73 | FFAS-3D | | -------------------------------------------------------------------------------------------------------------------------MANANQVALGRSNLSTGGGATDKYALYLKLFSGEMFKGFQHETIARDLVTKRTLKNGKSLQFIYTGRMTSSFHTPGTPILGNADKAPPVAEKTIVMDDLLISSAFVYDLDETLYALAEKYDRLIARSASPVSATNFVEPGGTQIRVGSGTNESDAFTASALVNAFYDAAAAMDEKGVSSQLVNRDVQGSALQSGNGVIEIAGIHIYKSMNIPFLGKYGVKYGGTTGETSPGNLGSHIGPTPENANATGGVNNDYGTNAELGA--KSCGLIFQKEAAGVVEAIGPQVQVTNGDVSVIYQGDVILG--- |
6 | 3j3iA | 0.08 | 0.08 | 3.08 | 1.38 | SPARKS-K | | IFSEMDTADYADMLHLTIFEGEKLLSADRAGYDVLVEETLANIRIEHHKMPAKRDSALRLTPRSRTAHR--VDMVR----ECDFNPTMNLKAAGPKLRGSGVKSRRRVSEVPLAHVFR--------------SPPRRESTTTTDGPQLTRRVPIIDEPPAYESGRSSSPVTSSISGTSQHEEEMGLFDAEETVIATEARRRLGRGTLERIQEAALEGQVAQGEVTAEEAMLSARDPQFTGREQITKMLSDGGLLVDKTVGVKGLKEVRRHLEEYGEREGFAVVRTLLSGNSKHVRRINQLIRESNPSAFETEASRMRRLRADWDGDAGSAPVNAFVGNSPGWKRWLEIPSDIQVAGKKRMCSYLAEVLSHGNL------KLSDATKLGRLFPPQLSSEEFSTCSEATLAWRNAPSSLGVRPFAQEDSR |
7 | 6fb3A | 0.08 | 0.05 | 2.11 | 0.67 | DEthreader | | DAPPIVPTQVLHE-IEKLIYLSSRT--YK-SLLKIIM--LMVAVEHTDAYGQ-K--VYGLSDAVVKRTAL--LQGFELDHNQFTQQPA---VGIAVDPVSGS-LY-VSDTRRI------------CLPFDRCGDAVDATL-MSPRVTDVLENVIL------AGRPMHCQVPGIDYSL------------------TNGEICLLAGASGDDGAAILNSPS--SLAVAPTIYRAVSKNRP-VECNNGTLRVISFCISLLTGVLKMVNLQSGGF--------------------------------E---------QR-SDVFEYNSKGL---------------DGLGRRASCKTLGHHL---------------N--NSEITSLYYDFAMEEYYVFSINGLMIKQLQFQLVI--------------GFQ |
8 | 1ulvA | 0.06 | 0.06 | 2.56 | 0.87 | MapAlign | | WYTLTEGTMSEVYYPHADTPNTRELQFAVSDGTSAQRESEQTTRTVELADPKALSYRQTTTDNAGRWRLTKTYVTDPRRSTVMLGVTFEVLD-------GGDYQLFVLSDPSLAGTSGGDTGSVTDGALLASDLADAATPVATALVSSVGFGAVANGYVGTSDGWTDLAADGRLDNASATAGPGNISQTGQIPLAAGGKTEFSLALGFGADTAEALATAKASLGTGYKKVSKSYTGEWKKYLNSLDAPATSLTGALRTQYDVSLMTVKSHEDKTFPGAFIASLTIPEGYHAVWARDMYQSVTALLAAGDEEAAARGVEWLFTYQQQPDGHFPQTSRVDGTIGQNGIQLDETAFPILLANQIGRTDAGFYRNELKAGPKTPQERWEETGGYSTSTLASQIAALAAAADIAGKNGDAGSAAVYRATADEW |
9 | 2nbiA1 | 0.14 | 0.12 | 4.22 | 1.06 | MUSTER | | -----QPSDLNPSSQPSECADVLEECP-------IDECFLPYSDASRPPSCLSGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGE-VIEECPLDTCFLPTSDPARPPDCTAVGRPDCDVLPFPNNLGCPACCPFECSPDNPMFTPSPDGSPPNCSPTMLPTPQ--------PSTPTVITSPAP----------------------------SSQPSQCAEVIEQCPIDECFLP-YGDSSRPLDCTDPAVN-RPDCDVLPTPQNINCPACCAFECRPDNPMFTPSPDGSPPICSPTMPSPEPSSQPSDCGEVIEECPIDACFLPKSDSARPPRPDNVLPFPNNIGCPPFECSPDNPMFTPSPDGSPPNCSPTMLPSPSPSAVTVPLTPAPSSAPT |
10 | 6xp5a | 0.14 | 0.10 | 3.36 | 0.72 | HHsearch | | ----------------------------EEVIHILSK-SKGLVSEA-GL---ERL-ARSLELEFMGSLLVEFSQDVVQSVTLNFP--DIILFNDLRLA-PGQ----SPLTKSLARLSILEAVADVYESLARLHAWELQKLRED--PSLAGKDDEYL-ENLVLCKSGKPAMNDR-------------GRVGLALDYEAEVASWIIIGCAPLRDLSINP-----VRISD-----------KWIGPNVK-TSLPD-GLHTLDPEPTFIPATDQQQQQ------PNADT-----TT-SKPTPN-----------AKASHK---KLDDFALAKHSSHSGPIS------NMTPSQHQPSSDLSIDVTL---RPKL------QIVFPLH-----ATS-KEEVKGKHEEGDQMEGEEKKRRRPQPGDGKWAEFVR- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|