Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320
| | | | | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCSSSCSSSSSSHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHSSSSSSSCCCCCCCHHHCCCCCSSSSCCCCCCCSSSSCCCHHHHCCSSSSCCCCCCCHHHCCCCCCCSSSSSCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCSSSSSSCCSSSCCCSSSSSSSCCCCCCCCSSSSSSSSCCSSSSSSSSSCCCSSSSSSSSSSSSCCCCSSSSSSCCCCCSSCCCCCHHHHHHCCCCCCCCCCCCCCC MAAGRAQVPSSEQAWLEDAQVFIQKTLCPAVKEPNVQLTPLVIDCVKTVWLSQGRNQGSTLPLSYSFVSVQDLKTHQRLPCCSHLSWSSSAYQAWAQEAGPNGNPLPREQLLLLGTLTDLSADLEQECRNGSLYVRDNTGVLSCELIDLDLSWLGHLFLFPRWSYLPPARWNSSGEGHLELWDAPVPVFPLTISPGPVTPIPVLYPESASCLLRLRNKLRGVQRNLAGSLVRLSALVKSKQKAYFILSLGRSHPAVTHVSIIVQVPAQLVWHRALRPGTAYVLTELRVSKIRGQRQHVWMTSQSSRLLLLKPECVQELELELEGPLLEADPKPL |
1 | 3rn2A | 0.12 | 0.07 | 2.35 | 0.70 | CEthreader | | ----------------------------------------------------------------------------------------------------EGFQKRCLPVMVLKAKKPFTFETQEGKQEMFHATVATEKEFFFVKVFNTLLKIPKRIIIIARYYR---------HSGFLEVNSASRVLDAESDQKVNVPLNIIRKAGETPKINTLQTQPLGTIVNGLFVVQKVTEK-----KKNILFDLSDN---TGKMEVLGVRNEDTMK---CKEGDKVRLTFFTLSKNGE--KLQLTSGVHSTIKVIKAK--------------------- |
2 | 1fguA | 0.08 | 0.05 | 2.10 | 0.68 | EigenThreader | | ---------------------------------------------------------------------------MSKVVPIASLTPY------------------QSKWTICARVTNKS----------QILELVDESGEIRATAFNKFFPLIEVNYYFSKGTLKIANKQFTAVKNYEMTFNNETPCEDDHHLPTVQFDF--TGIDDLENK------SKDSLVDIIGICKSYETKITVRSNAKRNIYLMDT--SGKVVTATLWGEDADKF--DGSRQPVLAIKGARVSD---FGGRSLSVLSSSTIIANIPEAYKLRGWFDAEGQALDGVS-- |
3 | 6w6wA1 | 0.97 | 0.35 | 9.90 | 0.80 | FFAS-3D | | -----------------------------------------------------------------------------------------------------------------------------------------------CELIDLDLSWLGHLFLFPRWSYLPPARWNSSGEGHLELWDAPVPQRN-----------------------------------LAGSLVRLSALVKSKQKAYFILSLGRV-------SIIVQVPAQLVWHRALRPGTAYVLTELRVSKIRGQRQHVWMTSQSSRL--------------------------- |
4 | 6w6wA | 0.18 | 0.16 | 5.07 | 0.77 | SPARKS-K | | QLVWERQLGLPLYLWATKALEELHHQFLQHSSPGSPSLGLQLLAPTLNAHNEILEEPHTRLQTPSSFPTLATLKEEGQRKAWASFDLPLPEASYLPSCQLNRRLAWSWLCLVLLGVLVASS-------HKGCLQLRDQSGSLPCLLLASDPRLIGCLVRAERFQLIPSWKELSMARVYVQFFL------------ADALILPV-------------PRPPHLGQSRLFLLCHKEALMKRKPALSFYVLGSWLGLPEQKVHLIFFG-SSVRWFEFLHPGQVYRLILF-----EKDRRPCLTVQDNWTLELES------LPESSLTDLLSDNFDSL |
5 | 3greA | 0.08 | 0.05 | 1.86 | 0.77 | CNFpred | | ----------------------------------------------------------------IKIWNLKEIIVGEVYSSSLTYD--------------------CSSTVTQITMIPN----------FDAFAVSSKDGQIIVLKVNHYQVKFLNCECIRKINLKNFGKNE--YAVRMRAFVNSLLVALTN------SRVIIFDIRT------------ERLQIIENSHGAVSSICIDEECCVLILGTTR-----GIIDIWDIR--FNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSKTFLTIWN----------------------- |
6 | 2cse1 | 0.05 | 0.04 | 1.67 | 0.67 | DEthreader | | SSLAEIPFSDDAMLP-IP--I------DVYVPNTSAPPLLSDLVNLAILQQTA-G---L-DPSLVLGITKSIFPQNLHSMYE---NDARVSLRKRTKTYV-KHD-SVYIDACTSGIFLVPTVGGSTSMG--RNQVQRR-PRSI-SGSAV---------------INIDINTMGWYDIYLKLYIPNLHPIVIILCCAFSFWGLPWAGIDLNSDPFLKMVS--VGP----------STRKYFAQTL-------------------STVQLARVVNLAV---PDTWM-SLD---------FDSMFKLRFLG-F-TWMRQE----------------- |
7 | 3kjpA | 0.12 | 0.08 | 2.83 | 0.95 | MapAlign | | --------------------------------------------------------------TNYIYTPLNQL--------------------------------KGGTIVNVYGVVKFFPYLSKGTDYCSVVTIVDTNVKLTCLLFLPIIYKNGDIVRFHRLKIQVY-----KKETQGITSGFASLTFEGTLGAPIIPRTHKMVEALRVWASTHCDVQPMQYFDLTCQLLGKA-EV---DGASFLLKVWDHRLQNLTIDILVYDN-HVHVARSLKVGSFLRIYSLHTKLQQTMLSLEFHLHGGRGIRVLPESNSDVDQL-------------- |
8 | 4v0mB | 0.13 | 0.11 | 3.87 | 0.46 | MUSTER | | LDAFNDPVAG-----ISAYTPCV--HTCNLFGDGENRL---VIRKLK-IWKGTQKASEHPLLTPVAICSYISENTAPRLPALSHIYYRNYKFVLPPENVNTEQPLVATTVITCMDVVKQAIDEPDAVSESGRILILNPAGTAIVKNIWVG----ITPAMIAVQGELDVGYR-AGRDGKLYHIRNGELSQTIIQLEAQPVGLVRLAKHVAVHAYTPTGHKS-WSLYLPCHILAMQRMEVTGQRNTKALIVALSN------EVRVYNEKLLVSVHVS--PNP--VTALWFGRYGREDNTLLAITKSGALDIKMLP--RTANLE------------- |
9 | 6w6wA | 0.85 | 0.38 | 10.80 | 5.37 | HHsearch | | ----------------------------------------------------------------------------------------------------------------------------------------------SCELIDLDLSWLGHLFLFPRWSYLPPARWNSSGEGHLELWDAPVP-----------------------------------QRNLAGSLVRLSALVKSKQKAYFILSLGR-------VSIIVQVPAQLVWHRALRPGTAYVLTELRVSKIRGQRQHVWMTSQSSRLLVRYSSYSGAVTLNEPAGLYELDGQLG |
10 | 5yzpA | 0.09 | 0.05 | 1.96 | 0.64 | CEthreader | | --------------------------------------------------------------------------------------------------GAVLHSEPLTVMVLTATDPFEYESPEHEVKNMLHATVATVSQYFHVKVFNINLKKFTKKNFIIISNYFESK-------GILEINETSSVLEAAPDQMIEVPNSIIRNANASPKICDIQKGTSGAVFYGVFTLHKKTVN-----RKNTIYEIKDG---SGSIEVVGSGKWH---NINCKEGDKLHLFCFHLKTIDR--QPKLVCGEHSFIKISKR---------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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