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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.15 | 2jcbA | 0.426 | 2.85 | 0.203 | 0.475 | 1.43 | PO4 | complex1.pdb.gz | 150,152,153,155,156,157,158 |
| 2 | 0.09 | 2jcbA | 0.426 | 2.85 | 0.203 | 0.475 | 1.31 | ADP | complex2.pdb.gz | 7,10,14,152,153,154,155,156,159,160,197,198 |
| 3 | 0.08 | 3hy4A | 0.424 | 2.77 | 0.171 | 0.470 | 0.81 | N5G | complex3.pdb.gz | 65,66,89,140,153,155,157,158 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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