Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCSSSCCSSSSSCCCSSCCCCCCCCCCCCSCCCCCSSSSCCSSSCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCSCCCCCCCCCCCCCCCCCCCCCCCCCCCSCCCCCCSSCCCSSSSSCCCCCCCCCCSCCCCCCSCCCCCSSCSCCSSSCHHHHHHHCCCCCCCCCCCCCCCCCCC MPVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESVQPHRPTTNPNTSKFAQKYGGAEKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKGFGYGQGAGALVHAQ |
1 | 6skuA | 0.01 | 0.01 | 1.11 | 0.83 | DEthreader | | EEFESDLIEIT-SYNKI-----INGRTFLLLLMQQ-------LPPATFYEPNVFYLVEARPPIYVGKHLVISGNMAMLDAGNMQAFGT--NHKLRDETLEAFRFL-GVDIDIP---TLM----ANTRL--TDTS--GNSVHVLPPLYAVLMA-----FEDRLGNNILHSAMRLLLHSELNKKKGKTILDIQYF |
2 | 1b8tA | 0.76 | 0.73 | 20.54 | 4.14 | SPARKS-K | | MPNWGGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNA--------GGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAGALIHSQ |
3 | 1b8tA | 0.61 | 0.53 | 15.28 | 1.16 | MapAlign | | -----GGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKK-YGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKN------------------- |
4 | 1b8tA | 0.77 | 0.76 | 21.56 | 0.92 | CEthreader | | MPNWGGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRP-TNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAGALIHSQ |
5 | 1b8tA | 0.77 | 0.76 | 21.56 | 3.27 | MUSTER | | MPNWGGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRP-TNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAGALIHSQ |
6 | 1b8tA | 0.77 | 0.76 | 21.56 | 2.92 | HHsearch | | MPNWGGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPT-NPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAGALIHSQ |
7 | 1b8tA | 0.68 | 0.68 | 19.32 | 1.82 | FFAS-3D | | MPNWGGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMG-AGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAGALIHSQ |
8 | 1b8tA | 0.65 | 0.62 | 17.75 | 1.48 | EigenThreader | | MPNWGGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVG-------GSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAGALIHSQ |
9 | 1b8tA | 0.77 | 0.76 | 21.56 | 7.58 | CNFpred | | MPNWGGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPT-NPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAGALIHSQ |
10 | 6bq1A | 0.11 | 0.09 | 3.35 | 0.83 | DEthreader | | GGGGGGGGGGGGGGGG--G--GGGGGGGGGGGGGGGGGGGGGGGGGGG--------GGGGG-GG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-GG-GG-GMQCVIVAKVFDFLN-----H-QFLLVNFN--------KYLSGLVFPHLLWSLAMWAPT-GNKDNELWEWLL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|