Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| SS Seq | CCCSSSSCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDGKDYDPVAARQGQETAVAPSLVAPALNKPKKPLTSSSAAPQRPISTQRTAAAPKAGPGVVRKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDEGFVIPDEGGPQEEQEEY |
1 | 1wyoA | 0.77 | 0.43 | 12.04 | 0.83 | DEthreader | | MAVNVYST--TSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYDGKDYNPLLARQGQDAPPP-P--GD--QIFSGPSSG----------------------------------------------------------------------------------------------------------------- |
2 | 1rt8A | 0.10 | 0.09 | 3.41 | 0.95 | MapAlign | | ----------INEEE-RREFIKHINSVLDVPINTFDQCKDGLILSKLINDSVPDTIDERVLNRPL-DNFKCIENNNVVINSAKAMGGIINIGAGDILEGREHLILGLVWQIIRRGNTHPGLEPAEGEREARVFTLWLNSLDVTPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGLTLALVWQMMRMNITKTMVAWANSMAAKGTGVFVLDVLHGIFIGSLMAV----------------- |
3 | 1wyoA | 0.78 | 0.44 | 12.46 | 3.36 | SPARKS-K | | MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYDGKDYNPLLARQGQDVAPPPNPGDQIFSGPSSG-------------------------------------------------------------------------------------------------------------------- |
4 | 1rt8A | 0.09 | 0.09 | 3.38 | 1.30 | EigenThreader | | ----------INEEERREFIKHINSVLANTETFEFFDQCDGLILSKLINDSVPDTIDERVLNKQRPLDFKCIENNNVVINSAKAMGGISIIGAGDILEGREHLILGLVWQIIRRGLEKILLRWFNYHLKAANWPRTVSNFSKDVSDGDVTPSIHDFFNNLRDGPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQALVWQMMRMNITKTLSDMVAWANSMAAKGGKGSQIVFVLDVLHGIKSEYVDYNLVTDGSTRKLGAVI |
5 | 1wyoA | 0.78 | 0.44 | 12.46 | 0.67 | CEthreader | | MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYDGKDYNPLLARQGQDVAPPPNPGDQIFSGPSSG-------------------------------------------------------------------------------------------------------------------- |
6 | 6sl2A | 0.09 | 0.09 | 3.30 | 1.22 | EigenThreader | | AMADSELVAQWEKVQIKTFTKWVNMHLKGRKINDVTTDFNGVELCALLEIIGETTIKCVTNPKM---RIQMTENLDKALRFIQSRDVLTGIGPTDIVDGNV-LTLGLVWTLILRFAISELSAEGLSWCQKKCEPYPVKVENFSPDLLDWETVGEDAEKELGIPKLLDVDDIVNMPRPDERSVMTYVAALYKVFSSNDQVEKAGKRAGNFLDLLRATEGMVHDYEQRAQALENIEAAINKMNGVTLFGQINSLRGMKRPVYVAPEGLDP |
7 | 1wyoA | 0.78 | 0.44 | 12.46 | 1.88 | MUSTER | | MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYDGKDYNPLLARQGQDVAPPPNPGDQIFSGPSSG-------------------------------------------------------------------------------------------------------------------- |
8 | 5jvmA | 0.68 | 0.21 | 5.95 | 1.83 | HHsearch | | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSNEDPKDTLLREFQEEIARLKAQLEKKGMLVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDEGFVIPD----------- |
9 | 1wyoA | 0.78 | 0.44 | 12.46 | 5.03 | HHsearch | | MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYDGKDYNPLLARQGQDVAPPPNPGDQIFSGPSSG-------------------------------------------------------------------------------------------------------------------- |
10 | 5jvmA | 0.69 | 0.21 | 5.94 | 1.13 | FFAS-3D | | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SNEDPKDTLLREFQEEIARLKAQLEKKGMLVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDEGFVIPD----------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|