Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520
| | | | | | | | | | | | | | | | | | | | | | | | | | |
| SS Seq | CCCCSSSSSSSCCCCCCSSSSSCCCCCHHHHHHHHHHHHCCSSSSSSSCCCCCSSSSCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSCCCCCCC MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGEDSLEQSPLLEDKYRRASEELDGLFRRYGSTVPAPNFAMPVTVPVSNQSSLQFSNPSGSLVTPSLVTSSLTDPRLLSPQQPALQRNSVSPGLPQRPASAGAMLGGDLNSANGACPSPVGNGYVSARASPGLLPVANGNSLNKVIPAKSPPPPTHSTQLGAPSRKPDLRVITSQAGKGLMHHLTEDHLDLNNAQRLGVSQSTHSLTTPVVSVATPSLLSQGLPFSSMPTAYNTDYQLTSAELSSLPAFSSPGGLSLGNVTAWQQPQQPQQPQQPQPPQQQPPQPQQPQPQQPQQPQQPPQQQSHLVPVSLSNLIPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPPPAVFPAARPEPGDGLSSPAGGSYETGDRDDGRGDFGPTLGLLRPAPEPEAEGSAVKRMRLDTWTLK |
1 | 5jcss | 0.06 | 0.06 | 2.62 | 1.23 | SPARKS-K | | GSGKTFLINELSKYMGCHDSIVKIHLGEQTDAKLLIGTYTSGDKPGTFEWRAGVLATAVKEGRWVLIE--DID-----KAPTDVLSILLSLLEKR-ELTIPSRGETVTVRINEDHQKDS---------SNKIYNLNMIGMRIWNVIELEEPSEEDLTHILAQKFPILTNLIPKLIDSYKNVKSIYMNTKFISLNKGAHTRVLFKNNGINKPDQLIQFAGAIGEFKALEPIIQAIGESLDIASSRISLFLTQHVPTLENLDDSIKIKEKLNIQKKSMNSTLFAFTNHSLRLMEQISVCIQMTEPAKMLAKKLTVIYKPKTVAVPIQENFETLFNATFSLKKNEKFHKMLHRCFNKNQWKNVVKLWNEAYKMAQSILKITNTENENENAKKKKRLNTHEKKLLLDKWADFNDSVKKFEAQSSSIENSFVFNFVEGSLVKTIRAGEWLLLDEVNLATADSISDLLTEPDSRSILLSEK----GDAEPIKAHPDFRIFACMNPATDVGKRDLPRSRFTE-IYVHS |
2 | 3mkqA | 0.06 | 0.06 | 2.56 | 1.32 | MapAlign | | --------------------RVKGIDFHPTEPWVLTTLYSG-RVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIKPYVLSGSDDLTVKLWNWENWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFSLAHSPNGRFVTVVGDGEYVIYTALAWRNKAFGKCQLIDETGQIKYYKNFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAKDVIWSDNGELVMIVNTNSGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKFIFTTATNRLNYFVGGKTYNLAHYTKEM----- |
3 | 1n6jA | 0.84 | 0.15 | 4.22 | 3.20 | HHsearch | | -GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDMDRVLLKYTEYSEPHESRTNTDILETLKRRGIG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
4 | 3f6kA | 0.06 | 0.06 | 2.61 | 0.79 | CEthreader | | LANNTHQHVFDDLRGSVSLSWVGDSTGVILVLTTFHVPLGQSKLYRSEDYGKNFKDITDLINNTFIRTEFGMAIGPENSGKVVLTAEVSGGSRGGRIFRSSDFAKNFVQTDLPFHPLTQMMYSPQNSDYLLALSTENGLWVSKNFGGKWEEIHKAVCLAKWGSDNTIFFTTYANGSCKADLGALELWRTSDLGKSFKTIGVKIYSFGLGGRFLFASVMADKDTTRRIHVSTDQGDTWSMAQLPSVGQEQFYSILAANDDMVFMHVDEPGDTGFGTIFTSDDRGIVYSKSLDRHLYTTTGGETDFTNVTSLRGVYITSVLSEDNSIQTMITFDQGGRWTHLRKPENSECDATAKNKNECSLHIHASYSISQKLNVPMAPLSEPNAVGIVIAHGSVGDAISVMVPDVTKMLEGPHYYTILDSGGIIVAIEHSSRPINVIKFSTDEGQCWQTYTFTRDPIYFTGLASEPGARSMNISIWGFTESFLTSQWVSYTIDFKDILERNCEEKDYTIWLAHSTDPEDYE |
5 | 1yvlB | 0.07 | 0.07 | 2.76 | 0.77 | EigenThreader | | YDDSFPMEIRQYLAQWLEKQDWEHAANDVSFATIRFHDLLSQLDDQYSNFLLQHNIRKSKRNLQDNFQEDPIQMSMIIYSCLKEERKILENAQRFNMLDKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNRE----HDQKQEQLLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSACIGGPPNACLDQLQNWFTIVAESLQQVTYEHDRTFSLFQQLIQSSPTHPQRPLVGVQVKLQELNYNLVLFDKDVNERNTVKGFRK---FNILGTHNGSGPLIVTEELHSTTSLPYNMLVAEPRNLSFFLTPPCWAQLSEVLSWQFSSVTKRGLNVDQLNMLGEKLLGPNASPDGLFCKENINDKNFPFWLWIESILELIKKHLLPLWNDGCIMGFISKERERALLKDQQPGTFLLRFS--------ESSREGAERSNGGEPDFHEPYTKKELSAVTFPDIIRNYKPLKYLYPNIDKDHAFGKYYSR----------- |
6 | 1n6jA | 0.86 | 0.15 | 4.22 | 0.75 | FFAS-3D | | -GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDMDRVLLKYTEYSEPHESRTNTDILETLKRRG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
7 | 4btgA | 0.12 | 0.11 | 3.95 | 1.21 | SPARKS-K | | SARGLTQAFAIGELKNQLSVGALQLPLQFTRTFSAS------------MTSELLWEVGKGNIDRLFFQYNQFTEYHQSACNPEIWRKLTAYTGSSNRAIKADAVGKVPPTAILEQLRTLITTDFVCHVLPLGFILPDAAYVYRVGRTATYPNFYALSSVDSKMLQATFKAKGALAPALLANAATTAFRSRGNFDANAVVSSVLTILGSTPKELDPSARLRNTNGIDQLRSNLALFIRAEVIFSDEELSSTIIPWFIEAMSE-----------VSPFKLRPI-------NETTSYIGQTSAIDHMGQPSH-VVVYEDWQFAKEITAFTPVKLANNSNQRFLDVEPGISDRMSATLAPIGFAVSAFNRTAVYEAVSQRGTVNSNGAEMTLGFPSALDRDIVDESLEARYAAVMHYAVAHNPEVVVSEHQGVAAEQGSLYLVWNPVGYNSIRTPEPNKPIQPSEVLQAKVLDLAIHIWPWHEASTEFAYEDAYSVTIKEFELLGLGQRREPTVAHAIIQMWYSW |
8 | 2i2oA | 0.09 | 0.02 | 0.72 | 0.47 | CNFpred | | ---------QAEAKQTNGSVFRRNLLNRLQQEFKAREETREWVCLVSFIC--NIFDYLMVALVHPVYDCLFRLAQSDALKNEEEVDCLVLQL-----------------HRIGDQLEKMNVQLMDELFNLLRDG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
9 | 5yz0A | 0.06 | 0.04 | 1.78 | 0.67 | DEthreader | | EDCGSYSRTAYNWDDSDVK------------F-EHGHVD---RNLKAT----SQHECSSSQLKLAFIDNLHHLCKHLDFREDETDVKAV--LGTLL-NLMEDPDKDHESHAQISRLIGAADLVPFAESHSSQANVFFAKASPAA----------------------------CSKDEL---ADY--P---------------------------SV-V-----E--AADNSRAQSAAILLSIYDCREMETNGGHLWRRFPHV-----------ITKVRHDLASKIF---TCCSIMMKTLLHILYVGCNQEDQQVYEI----TQTVFSMLLVTRFLDLIPQ--DTL-AVASFRSKAYTRAMHF-FKQH-F--K-AKQIIEWDELNYRVEAWKLSLMLCELSRLEMTQNS--------------------YLAPFAQLIIMVMRVNCKGATTDKLELLVEEATFSEILIP--Y---------LQKPKKISLKGSD---YIMMCK-PKDDLRKPLND------- |
10 | 3f6kA | 0.07 | 0.06 | 2.37 | 1.26 | MapAlign | | -------------IRTEFGMAIGPENSGKVVLTAEVSGGSRGGRIFRSSDFAKNFVQTDLPF--HPLTQMMYSPQNSDYLL-----ALSTENGLWVSKNFGGKWEEIHK----------------------------------------------AVCLAKWGSDNTIFFTTYANGSCKADLGALELWRTSDLGKSFKTIGVKIYSFGLGGRFLFASVMADKDTTRRIHVSTDQGDTWSMAQLPSVGQEQFYSILAANDDMVFMH-----------VDEPGDTGFGTIFTSDDRGIVYSKSLDRHLYTTTGGETDFTNVTSLRGVYITSV--------LSEDNSIQTMITFDQGGRWTHLECSLHIHASYSISQKLNVPMAPLSEPNAVGIVIAHGSVGDAISVMVPDVYISDDGGYSWTKMLEGPHYYTILDSGGIIVAIEHSSRPINVIKFS--------TDEGQCWQTYTFTRDPIYFTGLASEPGARSMNISIWGFTESFLTSQWVSYTIDFKDIL- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|