Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340
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| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSCCCSCCCCCCCCCCCCCCCCCCCCCCCSCCCCCCCCCCCCCCCCCCCCCCCCCSSSCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHCCCCCCSSSCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC QQNQPNLDTQSGPESLLNSQSPESKPQTPSQTKVENSNTVRTPEENGNLGKIPVKTRSAPTAPTPPPPPPPATPRKNKAAMCKPLMQNRGVSCKVEMKSKGSQTEEWKPQVIVLPIPVPIFVPVPMHLYCQKVPVPFSMPIPVPVPMFLPTTLESTDKIVETIEELKVKIPSNPLEADILAMAEMIAEAEELDKASSDLCDLVSNQSAEGLLEDCDLFGPAVVSIRYYAPVRQRKGRDTGPGKRKREDEAPILEQRENRMNPLRCPVKFYEFYLSKCPESLRTRNDVFYLQPERSCIAESPLWYSVIPMDRSMLESMLNRILAVREIYEELGRPGEEDLD |
1 | 1vt4I3 | 0.04 | 0.04 | 1.95 | 1.13 | CEthreader | | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG |
2 | 1vt4I3 | 0.04 | 0.04 | 1.94 | 1.97 | MapAlign | | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG---GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG |
3 | 6f3tA2 | 0.06 | 0.06 | 2.75 | 0.82 | CEthreader | | KLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKRDGEILASGSMDNTVRLWDAIKAFEDLTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAYSP |
4 | 6tnfA | 0.07 | 0.06 | 2.49 | 0.68 | EigenThreader | | TSGIINEIAVDQTAFQKKLRVALEKHPSYPDRSQFKNCLLPC------TPARCESLIKLLLGIKILQPAVVTLLLEKI----PEFNFPRLIVNQFKWLDGLLDP-----------VPIQHDIITSLPEILEDSQGRRLTVPILDALSRLDLDAELLAKVRQSAMVVIKFILHNVKVEVISDLRNCVKLLFDVIKLAVRVSEAWIKAIENSTSV---SDHKV--------LDLIVLLLIHSTNSKNRKQTEKVLRSKIRLGCMPEQLM---QNAFQNHSMVIKDFFDSYCLVTHVCSGNETELDISLDVLTDYILSTLAFSYIQDDMHMVIRKWLSSSVPN |
5 | 7aocA1 | 0.10 | 0.08 | 3.02 | 0.42 | FFAS-3D | | ----------------------------------------------GIYDVDDVEKISVKQIVNPVLLDNLNHPTNGGLYDLALGPYLKNSVC----ATCHLDERYCPGHFGHIVLPIPAY-----HPFFSQMYNLLRSTCLYCHHFKLS-----KVKVHLFFCRLKENVSLAKDAATLMRIRDEFVAKSIADSRQLTTLLLHERKKVVRAFYHAISSRK-----QCDNCQSFSPNFRKEGFAKIFEIPLSGKNLQFKYMTSTEVRNHLRRLFVKENVVLSRLYPA----SADMQNIAVPPTRFRASKMGENIQNELLTRILQSSIQIASLSKDSTVEE- |
6 | 5mm2A | 0.10 | 0.08 | 2.95 | 0.85 | SPARKS-K | | ----------------------SLPENAPNAVSNPQQFITPATALSAEEYNVHEALGETEELELDEFP---------VLVFKGNVPVDSVTSIPLDLATIYDFAWDGEQNAIAHLIPKSAFGPVIGNYITANLPTGVAGRI---LHNCLPG-----DCVDLAVSRILLGVAGTAVSAVVGG-----LADAVIDIGSNLLTEQPSANSSAISGENYQD-NPVFPTLLVEPQNFISNAMTALKTKVERNLFDRTVVPTVKEATLAD--IVIPNHMYGYILRDFLQNKRAF--------------------QSGTKQNVYFQQFLTVLSTLNDITSCSIDSES |
7 | 5t3eA | 0.08 | 0.03 | 1.29 | 0.68 | CNFpred | | ----------------------------------------------------------------------------------------------------------------------------------------------SLILLDMDMDQQPFFTKVEQTQSTLLDGLEHYDGVEFIRDYTRYHQMRPK--------------------------AVMPIVFTSMLAGAGAFAW---------------------------EEIGSLRHIHARTP-----QVYLDNVVIEKNGELLVSWNYVEELFDAEVMESMFTQFVELLDQLVEQGDINPLRIS |
8 | 6zymA | 0.05 | 0.04 | 1.63 | 0.67 | DEthreader | | PPEHRKIIRDHGDMTNRKF------------------------------------------------RHDKRVLALYMPHAVKLEPWEILTLVDDTPNVV---INPIS--ALWAPRPFTRRALDYLFRSFPERGNAHKGVAKTHLELRLLEACIPWKVPGLPTPIEN-------------M-ILRYVKAKADTRLYLKAEQERQHYYEKIDLTLLNRLLILVDLVLG-----------------------HRASEMAGPNDFLSIRLFCHIFF-YNNKKCWPRRMNPNRILP-----------QNEVTKE--RT-AQC-FL---VVNTQPQSDLSKDR-- |
9 | 2pffB | 0.05 | 0.05 | 2.25 | 1.47 | MapAlign | | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALADVMSIESLVEVVFYRGMAAGDLRALDTV------ |
10 | 2atyA | 0.09 | 0.08 | 3.16 | 0.68 | MUSTER | | PPPILNGRISYYSTPIAVGTVTFRLIGEKSLLCITKDKVDKPAPKCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNWCQMWGPTRLPTCVSVFPLEGSIEGRGGSELADPEVPRDCGCKPCICTVPEVSSVFIFPPKPKDVLTITLTPK-VVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQLYTIPPPKEQMLTCMITDITVEWQWNGQPAENYKNT-----QPIMNTNESYFVYSK--------------LNVQKSNWEAGEGLHNHHT |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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