Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| SS Seq | CCCHHHHCHHHHHHHHHHHHHHHHCHHHHHHCCCCSSSSSCCCCCCHHHHHHHHHCHCCCCSSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSSSSCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCSSSSSSCCCCCCCCHHHHHHCCCSSSCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCSCHHHHHHHHHHHCCHHHHHHCCCCCC WSSLSPPGLEALVSELCAVLKPRLQPGGALLTGTSSVLLRGPPGCGKTTVVAAACSHLGLHLLKVPCSSLCAESSGAVETKLQAIFSRARRCRPAVLLLTAVDLLGRDRDGLGEDARVMAVLRHLLLNEDPLNSCPPLMVVATTSRAQDLPADVQTAFPHELEVPALSEGQRLSILRALTAHLPLGQEVNLAQLARRCAGFVVGDLYALLTHSSRAACTRIKNSGLAGGLTEEDEGELCAAGFPLLAEDFGQALEQLQTAHSQAVGAPKIP |
1 | 3cf1B | 0.22 | 0.21 | 6.73 | 1.33 | DEthreader | | LGYDDIGGCRKQLAQIKEMVELPLHALFKIVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRETHGVERRIVSQLLTLMDGL--K-QRAHVIVMAATNRPNSIDPALRRRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD-LIDLEDETID-AEVMNS-LAVTMDDFRWALSQSN--PS-ALRE---- |
2 | 3h4mA | 0.25 | 0.23 | 6.98 | 1.65 | SPARKS-K | | VRYEDIGGLEKQMQEIREVVELPLKHPELGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRE--------LRDY------------VTMDDFRKAVEKIMEKKKVK------- |
3 | 3cf1B | 0.22 | 0.21 | 6.75 | 0.71 | MapAlign | | EVGYDIGGCRKQLAQIKEMVELPLRHPALFVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTEVERRIVSQLLTLMD---GLKQRAHVIVMAATNRPNSIDPALRGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKMDLIDLE----DETIDAEVMNSLAVTMDDFRWALSQSNPSAANECQANFI- |
4 | 3h4mA | 0.25 | 0.23 | 7.08 | 0.46 | CEthreader | | VRYEDIGGLEKQMQEIREVVELPLKFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDAGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRE--------------------LRDYVTMDDFRKAVEKIMEKKKVK------- |
5 | 2dhrA | 0.25 | 0.23 | 7.09 | 1.49 | MUSTER | | FKDVA--GAEEAKEELKEIVEFLKNPSRFHEMGPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--------------------RRKITMKDLEEAADRVMMLPAKKSLVLS-P |
6 | 5e7pA | 0.26 | 0.24 | 7.40 | 1.31 | HHsearch | | LD--DVGDMVETKRALTEALWPLQHPDTLGIDPPRGVLLYGPPGCGKTFVVRALASSGRLSVHAVKGSELMDKWVGSSEKAVRELFARARDSAPSLVFLDEIDALAPRRGQNFDSGVTDKVVASLLTELDGIEPLRDVVVLGATNRPDLIDPALLRRLERLVFVEPPDAAARRDILRTAGKSIPLADDVDLDSLADDLDGYSAADCVALLRESAMTAMRRSIDA------------------ADVTAADVAKARETVRPSLDPAQVLREFA |
7 | 3h4mA | 0.27 | 0.23 | 7.15 | 2.89 | FFAS-3D | | -----IGGLEKQMQEIREVVLPLKHPELFGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRE--------------------LRDYVTMDDFRKAVEKIMEKKK--------- |
8 | 6matA | 0.22 | 0.21 | 6.77 | 0.82 | EigenThreader | | DIAGVDDTLQRLLKEVWFPLRGGEACEKMGYRYDNGVLLHGPSGCGKTTLAHAIAGSIGVAFIPVSAPSVIGGTSGESEKNIRDVFDEAIRLAPCLIFLDQIDAIAGRRESAMESRIVAEIMNGMDRIRQNTPLGKNVVVLANRPEF-LDPAIRRRFSVE-IDMGMPSERAREQILRSLTRDLSLADDINFKELAKMTPGYVGSDLQYVVKAAVSESFQARAKHPADHLANVWLLLEAHRPSTKITMEQFRKAVSLVQPASKREGFSTIPD |
9 | 5kiyA | 0.22 | 0.21 | 6.52 | 1.62 | CNFpred | | VGYDDIGGCRKQLAQIKEMVELPLR---IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL---EDETIDAEVMNSLAVTMDDFRWALSQSNRSH---------- |
10 | 5g4fA | 0.23 | 0.22 | 6.92 | 1.33 | DEthreader | | SSEDIGLSLGKIREMIELPLKHPELFERLGITPPKGVILYGPPGTGKTLIARAVANESGANFLSINGPEIMSKYYGQSEQKLREIFSKAEETAPSIIFIDEIDSIAPKREEVQGVRRVVAQLLTLMDGM--KER-GHVIVIGATNRIDAIDPALRRRFDREIEIGVPDRNGRKEILMIHTRNPLGMSNKFLEEMADYTYGFVGADLAALVRESAMNALRRYLP-E-IDLDKPIP-TEIL-EKMVVTEDDFKNALKS-I--EP-SSLR---- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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