Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460
| | | | | | | | | | | | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCSSSSSSCCCCCSSSSSCCSSSSSSSSCCCCCCCCCCCCCCCSSCCCCCCCCCCCCCCSSSSSCCCCCSSSSSSCCCCCCCCCCSSSSSSSSSCCCCCSSSCCCCCCCCCSSSSCCCCCCCCSSSSSSSSSCCCCCSSSSSSSSSSSCCCCCCCCCCCCCCCCCCSSSSCCCSSSSSSSSSSCCCCSSSSSSCCSSCCCCCSSSSSSCCCSSSSSCCCCCCCCSSSSSSSSSCCCSSSSSSSSSSSCCCCCCCCCSSSSSCCCSSSSSSSCCCCCCCCSSSSSSSSCSCCCCSSSSSCCSSCCCCSSSSSCSSCCCCSSSSSSSSSCCCCCSSSSSCCCSSSSCCCCCCCCCCCSSSSCCCCCCCSSCCCCSSSSCCCCSSSSSSSSSSCCCCSSSSSSCCSSCCCCCCSSSSSCCCSSSSSSCCCCCCCCSSSSSSSSSCCCSSSSSSSSSSSSCCCC MMEKNTSEGPACSPEETASESAKVPTAEPPGEVAVSESTREEQVPKPQAPAPQAPTASTATKPAPPSEDVPSAPLLLTLDDVSSSSVTVSWEPPERLGRLGLQGYVLELCREGASEWVPVSARPMMVTQQTVRNLALGDKFLLRVSAVSSAGAGPPAMLDQPIHIRENIEAPKIRVPRHLRQTYIRQVGETVNLQIPFQGKPKPQATWTHNGHALDSQRVSMRTGDQDSILFIRSAQRSDSGRYELTVRVEDLEAKAVIDILVIEKPGPPSSIRLLDVWGCNAALQWTPPQDTGNTELLGYMVQKADKKTGQWFTVLERYHPTTCTISDLIIGNSYSFRVFSENLCGLSTSATVTKELAHIQKADIAAKPKGFIERDFSEAPSFTQPLADHTSTPGYSTQLFCSVRASPKPKIIWMKNKMEIQGNPKYRALSEQGVCTLEIRKPSPFDSGVYTCKAINVLGEASVDCRLEVKASAAH |
1 | 4ofyD | 0.10 | 0.07 | 2.45 | 0.83 | DEthreader | | ------------------------------------------------------------------------VYSQWKS--N----TGSLLGYH------------------------------------DDDGE----YECQMLH--------GP-IRA-KSFLNIIVPPQLVYFSNYQPSIIAVKENTPLNITCVVPVKPEPEVLWYMDGKVMSR---DVKQASVYTSLVVQSDRNDHGKVITCEAFQKEIRITTNTTLDVLFPPSDPTVEILRNLRGDNVTIACSVT--GGN-PPPDVFWYHE------NKRLQSHSTIKNIYSFIASQNDMAEYECRAN--NSRPKRKAMKLE-VN-------------------Y-PPASVELFGESNIRSSANIQCKSLPSNPASQITWIINGRSVPT----PTQREFVSSSCVSVHSNELHQINVECMATNPEG-SSAKQHVIKII-A-- |
2 | 3b43A | 0.14 | 0.13 | 4.41 | 1.64 | SPARKS-K | | --------------AMEPPYFIEPLEHEAAIGEPITEHTKLRSAPAYKMQFKNNVASVGAVASSKERKLPPSFARKLDVHETLGFPVAFECRINGSEP----LQVSWYKLLKDDANLQTSFIHN--VATLQILQTDQSHVGQYNCSASNPLG---TASSSAKLTLSEHEVPPFFDLKP---VSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLSRIVKQDEHTRYECKIGGSPE--IKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE---------------------PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRF |
3 | 3b43A | 0.15 | 0.12 | 4.02 | 0.74 | MapAlign | | -------------------------------------------------------------------KLPPSFARKLKDVHETLGPVAFECRIN---G-SEPLQVSWYKD------GELLQTSFHNVATLQILQTDQSHVGQYNCSASNPLGTA-SSSA--KLTLSEHEVPPFFDL---KPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLSRIVKQDEHTRYECKIG---GSPEI-KVLWYKD------ETEIRMSFSVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRSDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE---- |
4 | 2jllA | 0.14 | 0.11 | 3.78 | 0.52 | CEthreader | | ---------------------------------------------------------------------QPHIIQLKNETTYENGQVTLVCDA------EGEPIPEITWKRAVDGFTFTEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGH---QKSMYLDIEY---APKFISN---QTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPATNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTL-----------------PVREPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVK-----YRSQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPN |
5 | 3b43A | 0.15 | 0.13 | 4.51 | 1.49 | MUSTER | | QFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKL----------KDVHETLGFPVAFECRINGSEPLQVSWYK----DGELL---------KDDANLQTSFIHNV--ATLQILQTDQSHVGQYNCSASNPLGTASSSA---KLTLSEHEVPPFFDLK---PVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLSRIVKQDEHTRYECKIGGS--PEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSL---------------------KVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRF |
6 | 3b43A | 0.17 | 0.15 | 4.96 | 0.63 | HHsearch | | ------AMEPPYFIEP--LEHVEAGTPEIRIAHKLRSAPAFNKVDHSDVGIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKANLGQYNCSACAPIKITWAKDNREIENTATLTVLKVTKGDAGQYTCYASNVAGKDS---CSAQLGV---QEPPRFIKKLE--PSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPPVETLKGADVHLECE--------------LQGTPPFQVSWHKDKRENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSI---------------------TLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRSDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE---- |
7 | 3lafA | 0.17 | 0.13 | 4.15 | 1.99 | FFAS-3D | | -------------------------------------------------------------------RRSLHEPSDAVTMRGGNVLLVIKW----KKDGLILA-------LGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDS---GSIISRTAKVMVAGPLRFLSQT----ESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAI------EGKDAVLECCVSGYPPPSFTWLRGEEVIQGSNLLISNVTDDDSGTYTCVVTYKNENISAS---------------------AELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIV---GGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP--- |
8 | 5i99A | 0.16 | 0.12 | 3.85 | 1.00 | EigenThreader | | -------------------------------------------------------------------PGSSRNPMKKMVQVQVGSLVILDC-------KPRRALSFWKKG------DMMVREQARNDGGLKIMNVTKADAGTYTCTAENQ------------FVTEP--TRIILAP-----SNMDVAVGESVILPCQVQHDLDIMFAWYFNGATDFGSHFEKVGGSSSGDLMIRNIQLKHSGKYVCMVQTGVDSVSSAAELIVRGSPGPP---ENVKVDEITAQLSWTEGTDSHSPVI-SYAVQARTPFSVGWQSVRTVPKTHTATVVELNPWVEYEFRIVASNKIGGGEPSLPSEKVRT-----------------EEAAPEIAPSEVSGGGGSRSELVITWDLQNGGGFGYVVAFR--PLGVTTWIQTVVTSPPRYVFRNESIVPFSPYVKVGVYNNKGEGPFSTTVFSAEEE-- |
9 | 3b43A | 0.17 | 0.12 | 4.09 | 4.29 | CNFpred | | -------------------------------------------------------------------------PVAFECRINGSEPLQVSWYKDGELL--DDANLQTSFIH--------------NVATLQILQTDQSHVGQYNCSASNPLGTA---SSSAKLTLSEHEVPPFFDLKP---VSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIK-PSRIVKQDEHTRYECKIGGS---EIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLK---------------------VKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRF |
10 | 5lf5A | 0.10 | 0.07 | 2.61 | 0.83 | DEthreader | | -------------------------------------------------------PKNY-PVKVVHFQGRSR---------------------LLSTL--SPELGG------------VL-D-IV--NTPNIVVPPEVEVSCMVPDNC------GTWVQVSLLASLDVKYPPVIVEM--N-SSVEAIEGSHVSLLCGADSNPPPLLTWMRD-G-MVL---REAV-AKSLYLDLEEVTPGEDGVYACLAENAYGQDNRTVELSVMYAPWKPTVNGTVVAVEGETVSILCST-QS-N-PDPILTIFK------EKQILATVIEQLQLELPAVTPEDDGEYWCVAE-NQYGQRATAFNLS-VE-------------------FAPIILLESHCAAA-RD-TVQCLCVVKSNPEPSVAFEL-PSTVNETEREFVYSERLTSILTIR-GQAQAPPRVICTSRNLYGTQSLELPFQGA----- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|