Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420
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| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCSSSSSSCCCCCCCCSSSSSSSSCCSSSSCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AEGRDSSKGEDSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTKHGKNPVMELNEKRRGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALDANKKKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRGFGGANHGGYMNAGAGYGSYGYGGNSATAGYSQFYSNGGHSGNASGGGGGGGGGSSGYGSYYQGDNYNSPVPPKHAGKKQPHGGQQKPSYGSGYQSHQGQQQSYNQSPYSNYGPPQGKQKGYNHGQGSYSYSNSYNSPGGGGGSDYNYESKFNYSGSGGRSGGNSYGSGGASYNPGSHGGYGGGSGGGSSYQGKQGGYSQSNYNSPGSGQNYSGPPSSYQSSQGGYGRNADHSMNYQYR |
1 | 5jcss | 0.07 | 0.07 | 2.79 | 1.23 | SPARKS-K | | SLDIASSRISLFLTQHVPTLENLDDSIKIAVLLKEKLNIQKKSMNSTLFAFTNHSLRLMEQISVIQMTEPVLLVGETGTAKML---------AKKYKPKTVAVPI------QENFETLFNATFSLKKNEKFHKMHRCFNKNQWKNVVKLWN---EAYKMAQSILKITNTENENENAKKKKRRLNTHEKKLLLDKWADFNDSVKKFEAQSSSIEAGEWLLLDEVNLATADPDSRSILLSEKGDAEPIKAHPDFRIFACMNPAT--DVGKRDLPMGIRSRFTEIYVHSPERDITDLLSIIDKYIGKYSVSDEWVGNDIAELYLEAKKLSDNNTIVDGSNQKPH----FSIRTLTRTLLYVTDIIHIYGLRRSLYDGFCMSFLTLLDQKSEAILKPVEKFTLGRLKNVKSIMSYIITPFVEKNMMNL |
2 | 3v4pA | 0.09 | 0.08 | 2.90 | 1.21 | MapAlign | | ---------------------------------------------------------LLYQGPHNTLFGYSVVLHSHGANRWLLVGAANWLSVINPGAIYRCREQLGVTLSRQPGENGSIVTCGHRWKNIFYIKNENKLPTGGCYGVPPDLRTELSKRIAPCYQDYVKKFGENFASCYTKDLIVMGAPGSSYWTGSLFVYNITTNKYKAFLDKQNQVKGSYLGYSVGAGHFRSQHTTEVVGGAPQHEQIGKAYIFSIDEKELNILHEMKGKKLGSYFGASVCAVDLNADGFSDLLVGAPMQVFVYINSGSGAVMNAMETNLVGSDKYAARFGESIVNLGDIDNDGFEDVAIGAPQEDDLQGAIYIYNGRADGISSTFSQRIEGLQISKSLSMFGQSISGQIDADNNGYVDVAVGAFRSDSAVLL |
3 | 2l3jA | 0.40 | 0.12 | 3.62 | 1.93 | HHsearch | | VQFPNASEADFTSDQA-DFPDTETEPNGDDSFSSSGDASPVPASLTQPPFPPPSGKNPVMILNELRPGLKYDFLSESGESHAKSFVMSVVVDGQFFEGSGRNKKLAKARAAQSALATVFNLHLLEHHHH-------------------HH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
4 | 3v4pA | 0.08 | 0.07 | 2.79 | 0.82 | CEthreader | | --------------------------------------------------YNVDTESALLYQGPHNTLFGYSVVLHSHGANRWLLVGAPTANWLANASVINPGAIYRCRIGKNPGQTCEQLQLGSPNGEPCGKTCLEERDNQWLLSRQPGENGSIVTCGHRWKNIFYIKNENKLPTGGCYGVPPDLRTELSKRIAPCYQDYVKKFGENFASCQAGISSFYTKDLIVMGAPGSSYWTGSLFVYNITTNKYKAFLDKQNQVKFGSYLGYSVGAGHFRSQHTTAPQHEQIGKAYIFSIDEKELNILHEMKGKKLGSYFGASVCAVDLNADGFSDLLVGAPMQSTIREEGRVFVYINSGSGAVMNAMETNLVGSDKYAARFGESIVNLGDIDNDGFEDVAIGAPQEDDLQGAIYIYNGRADGISSTFS |
5 | 6gmhQ | 0.14 | 0.13 | 4.45 | 0.88 | EigenThreader | | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGGGGGGGGG---------GGGGGGGGGGGGGGGGGGGGGGGGGGG------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSSFVLPFFGLGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDRAKAEAEHDEH |
6 | 2l3jA | 0.36 | 0.10 | 2.88 | 0.70 | FFAS-3D | | -----------------------------------------------GPVLPK---NALMQLNEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQADFPDTLFNGFETPDKSEPP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
7 | 7abiA | 0.09 | 0.08 | 2.98 | 1.17 | SPARKS-K | | -----------------------------PEHVRKIIRDHGDMTNRK----FRHDKRVYLGALKYMPHAVLKLL-ENMPMQIRDVPVLYHITGASFVNEIPWSQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNILDVEPLEA-------IQLELDPEEDAPVLDWFYDHQPLRDSRKYVNGSTYQRWQFTLPMMSTANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDNKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTW--YHTPNVVFIKTEDPDLPAFYFDPLINPISHRHS----------VKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRRALDIPLVNWYREHCPAGQPVKVRVSYQKL |
8 | 4zhjA | 0.06 | 0.04 | 1.83 | 0.67 | DEthreader | | ---------------------------------------------IRRVDP----LKVVYV-----QLTGYL----------IEELNYFKHVS----A-LIFILADKVVEAVTPYRDNLDMGS--LPVEK-------GLDFSVNYFWDK-EPLPIVDAVVSLTGALPLVFQ-------QIAPELGAIEPIILQDRLEAI--QRAMKWANL-K---TPYYTNHIWKADAVLHFGTHGEFNLIGTI------------PNLYYYAANNTPPTNILDREDEGIPRNPNVLPTGKNIHALDPSIPTLAAVSA---WGTDNIKTYGLAQMWMK---VNCSGRFSNASYLKRKSFAF-------DQNRDM--FE-----RALKT-----A-DATFQNLSL-----YFDSDPTKLISTLRDGKAPAATAGA |
9 | 3vi3A | 0.08 | 0.07 | 2.66 | 1.13 | MapAlign | | ------------------------------------------------FNLDAEAPAVLSGPPGSFFGFSVEFYRPGTDGVSVLVGAPANTVLQGGAVYLCPWCTPIEFDSKGSRLLESSLSSSEGEEPVEY-----KSLQWFGATVRAHGSSILACAPLYSWRTEKEPLSDPVGRSDFSWAAGQGYCQGGFSAEFTKTGRVVLGGPGSYFWQGQIDDSYLGYSVAVGEFSGDDTEDFVAGVPKGNLTYGYVTILNGSDIRSLYNFSGEQMASYFGYAVAATDVNGDGLDDLLVGAPLLMDRTPDGRPQEVGRVYVYLLTLTGHDEFGRFGSSLTPLGDLDQDGYNDVAIGAPFGGETQQGVVFVFPGGPGGLGSKPSQVLQPLWAASHTPDFFGSALRGGRDLDGNGYPDLIVGSFGVDKAVV |
10 | 1zlgA | 0.10 | 0.09 | 3.44 | 0.95 | MUSTER | | APEKASGFAAACVESDNECSGVKSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSG--LEVNISIEPVIYVVRRWNYGIHPS------EDDATHWQTVAQTTDE---------LTDIRPSRVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSDLPEEPDIPVHH-FWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQKKTEDPTVNRRWFPEACAHNRTTGSEASSGMTHENYIILQDFSCKYKVTQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITMAKANLYQPMTGFEVTTESRQNSLPN |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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