Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320
| | | | | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCSSSSCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCSSSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCCSSSSSSCCCCCSSSSCCCCCCCSSSSSSCCCCCCCCCCCCCCCCCSSSSSSSSCCCCCCCCCCCCSSSSSSSSSCCCCCCCSSSSSSSSSSCCCCCSSSSSSSSCCCCCSSSHHHHHHHHCC MHLEGRDGRRYPGAPAVELLQTSVPSGLAELVAGKRRLPRGAGGADPSHSCPRGAAGQSSWAPAGQEFASFLTKGRSHSSLPQMSSSRSKDSCFTENTPLLRNSLQEKGSRCIPVYHPEFITAEESWEDSSADWERRYLLSREVSGLSASASSEKGDLLDSPHIRLRLSKLRRCVQWLKVMGLFAFVVLCSILFSLYPDQGKLWQLLALSPLENYSVNLSSHVDSTLLQVDLAGALVASGPSRPGREEHIVVELTQADALGSRWRRPQQVTHNWTVYLNPRRSEHSVMSRTFEVLTRETVSISIRASLQQTQAVPLLMAHQYLRG |
1 | 7cunG | 0.10 | 0.10 | 3.74 | 0.43 | CEthreader | | CLTGLQEENYSSALSCIAESLKFYHKGIASLTAASTPLNPLSFQCEFVKLRIDLLQAFSQLICTCNSLKTSPPPAIATTIAMTLGNDLQRCGRISNQMKQSMEEFRSLASRYGDLYQASFDADSATLRNVELQQQSCLLISHAIEQEYGSTGTAHADSEYERRMMSVYNHVLEEVESLNRKYTPVSYMHTACLCNAIIALQSTSIKLALSPSPRNPAEPIAVQNNQQLALKVEGVVQHGSKPGKIQSVCLNVSSTLQSKSGQDYKIPIDNMTNEMEQRVEPHNDYFSTQFLLNFAILGTHNITVESSVKANGIVWKTGPRTTIFV |
2 | 3ohmB | 0.08 | 0.07 | 2.97 | 0.67 | EigenThreader | | VETALESCGLKFNRSESIRLTLEQLMDFINQKQRDPRLNEVLYPPLRIEKYEPNQQFLERDQMSMEGFSRYLGGEENGILPLEALDLSSHNTYLTAGQLAGTSSTHGFTMTTPLRDVLEAIAETAFSAKQQAKMAEYCRSIFGDALVNATEEMSTLVNYIEPVKFKSFEAARKRNKTKAMEQLTKSPMEFVEYNKQQLSNYMPVGCQLVANGRSGYLLKPEFIVANALRVKVI-SGQFLSDRKV---GIYVEVDMFGLPVDTRRKYRTRTSQGN----SFNPVWDEEPFDFPKVVLPTLASLRIAAFEEGGKFVGHRILPVSAIR |
3 | 5a1wH | 0.14 | 0.10 | 3.27 | 0.41 | FFAS-3D | | ----------------------------------------------------------------GKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESPMEKLYMVLITTKN--------SNILEDLETLRLFSRVIPEYCRALEENE--------ISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEPPINMESVHMKIEE----KITLTCGRDGGLQNMELHGMIM--LRISDDKFGRIRLHVENEDKKGVQLQTHPNVDKK------LFTAESLIGEKSFPVNSDVGV-LKWRLQTTEESFIPLTIN------ |
4 | 4btgA | 0.14 | 0.13 | 4.42 | 0.65 | SPARKS-K | | QDMVKQRGRAEVIFSDEELSSTIIPWF---IEAMSEVSPFKLRPNETTSYIGQTSAGQPSHVVFAKEITAFTPVKLANNSNQRFL---DVEPGISDRMSATLAPIGNTFAVSAFVKNYEAVSQRGTVNSNGAEMTVERDYALDRDPMVAIAALRTGIVDESLE--------ARASNDLKRSMFNYYAAVMHYAVA----HNPEVVVSEHQAAEQGSLYLVWNVRTE-LRIPV-GYNAIEGGSIRTPEPLEAIAYNKPIQPSEVLQAKVLDIHIWP---WHEASTEFAYEDAYSVTIRNKYTAEVKEFEQRRERVRILKPTVAHAI |
5 | 1e3hA | 0.09 | 0.02 | 0.93 | 0.71 | CNFpred | | -------------------------------------------------------------------------------------------------------------------------------------------------------------------VVATIMALN---PDHLYDVVAINAASASTQLAGLPF--GPIGGVRVALIGQWVAFPTHELEDAVFDMVVAGRVLE-----DGDVAIMMVEAEATE------------------------------------------------------------------- |
6 | 6hvgA | 0.07 | 0.05 | 1.93 | 0.67 | DEthreader | | --------WLQGFLDNVDALLAGFKGTDK-DA-SIL-----------G-KDPQYVNQQGN-A-----QLTMDYVTYSFVRAH----KDQENKKYNDY-LPSAYAMDTIYPVIALARIKYFGQDYKNQGIGVILLYRALSDD------LRTNDLIFHTNTFVKQDGASDSQDLKELGITSFE-LAP-QY--R--SSGDTN--YGGSFTDRDLGFNKAALPGKEVVANTKSGQGGEFLDK-LREEYPSLFKQN---------------------ASTK-----------IKQWSAK----YMNG------------------TNILR |
7 | 3c7gA | 0.07 | 0.07 | 2.76 | 0.92 | MapAlign | | PVALTYNGRVYIY---MSSDDYEYNSNGTIKDNSFANLNRVFVISSADMVNWTDHGAIPVAGANGANGGRGIAKWAGASWAPSIAVKKINGKDKFFLYGVLTADSPIGPWTDPIGKPLVTPSTPGMSGVVWLFDPAVFVDDDGTGYLYAGGGVPGVSNPTQGQWANPKTARVIKLGTSVVGSASTIDAPFMFEDSGLHKYNGTYYYSYCINFEIGYMTSADFGAGGARSFKANVAS----------TLGGKIEVRLDS-------ADGKLVGTLNVPSTGGAQTWREIETAVSGAT-GVHKVFFVFTGTGTGNLFFDYWQFTQR- |
8 | 1vw1A | 0.09 | 0.09 | 3.49 | 0.53 | MUSTER | | LKLEKNRAPQGEDTLLVMFYNQQDTLDSKNASMQGLYIFADMASKDMTPEQSNVYRDNSYQQFDTNNVRRVNNRYAEDYEIPSSVSSRKDYGWGDYYLSMVYNGDSDLKIYISPKLRIIHNGYEGQKRNQCNLMNKYGKLGDKFIVYTSLGVNPNNSSNKLMFYPVYQYSGNTSGLNQGRLLFHRDTTYPSKVEAWIPGAKRSLTNQNAAIGDDYATDSLNLKQYIFMTDSKGTATDVSGPNTAISPAKVQIIVKAGGKEQQPSPSFDEMNYQFDGSGLNFINNSASIDVTFTAFAEDGESFSIPVTLKVSTDNALTLHHQYMQW |
9 | 2pffB | 0.17 | 0.16 | 5.15 | 1.24 | HHsearch | | VLLVPTASFFIASQLQEQFNKILPEPTEDEPTLVGKFLGYVSSLVEPSKVGQFDQTEFENCYLEGNDIHALLQENTARIMAKRPFDKKSNSALFRAGNAQLVAIGQGNTDDYTLDAEKVFTQGLEWLENPSNTPDKDYLLSIPIAKLLGFTPGELRSYLKGATESFFVSVR------KAITVLFFIGVRCYLPPSILENEGVPSPMLSISNLTQEYVNKTN------SHLPAGKQVEISLV--NGAKNLVVS-------------GPPQSLYGLTLPASPFHSHLLVPASSFQIPVYDTFSISERIDCIIRLPVKWETTTQFKAT |
10 | 6z9cA | 0.06 | 0.05 | 2.11 | 0.41 | CEthreader | | -----------------------------------------------------------SMLSSRNRVGVFEVPKQNGKYETGQLFLHSIFGYRGVVLFPWQARLYDRDVAVKGKTHTYYQVLIDARDCPYAIPGLDYVSHEDILPYTSTDQVPIQHELFERFLLYDQTKAPPFVARETLRAWQEKNHPWLELSDVH-------RETTENIRVTVIPFYMGMRSHVYWWRYCIRLENLD----SDVVQLRERHWRIFSLSGTLETVRGRGVVGREPVLSKEQPAFQYSSHVSLQASSGHMWGTFRFERPDGSHFDVRIPPFSLES |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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