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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.67 | 1fs10 | 0.682 | 1.18 | 0.991 | 0.712 | 1.64 | III | complex1.pdb.gz | 2,3,5,12,13,15,56,60,63,66 |
| 2 | 0.46 | 2e311 | 0.776 | 1.36 | 0.940 | 0.816 | 1.81 | III | complex2.pdb.gz | 97,98,101,104,108,116,117,120,121,123,124,127,128,129,130,132,135,136,140,141,144,145,150 |
| 3 | 0.02 | 1buo0 | 0.522 | 1.72 | 0.129 | 0.571 | 0.81 | III | complex3.pdb.gz | 17,18,21,22,23,28,61,62,65,93,95,114,122 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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