Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320
| | | | | | | | | | | | | | | | |
| SS Seq | CCCCHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSSCCCCCSSSCCHHHHHHHHCCCCCCSSSSCCCCCCCSSCCCCCCCSSCCCCCSSSSCCSSSSSCCCCCHHHCCCSCCCCCCCHHHHHHHHCCCCCCCCSCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCSSSSSSCCCCHHHHCCHHHHHHCCCCCSCCCCCCCCCCCCCCCCCSSSSSCCCSSSSCCCCHHHHHHSSSSCCCCCCCCCCC QNVDYNQLQEVIYPETLKLEGKGPELVGPSESKPRGTSPLPAGQVPVTLQPQKQVKENKTQPPVAYQYWPPAELQYRPPPESQYGYPGMPPAPQGRAPYPQPPTRRLNPTAPPSRQGSELHEIIDKSRKEGDTEAWQFPVTLEPMPPGEGAQEAANPPVNIDADQLLGIGQNWSTISQQALMQNEAIEQVRAICLRAWEKIKPIPLTWKTEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNAVIQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPAT |
1 | 1rw3A | 0.23 | 0.10 | 3.20 | 1.69 | SPARKS-K | | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------TWLSDFPQAWAETGGMGLA------------VRQAPLIIPKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGNDYRPVQDLREVNKRVE-----DIHPTVPNPLPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQ |
2 | 5m11A | 0.08 | 0.08 | 3.18 | 1.08 | MapAlign | | -LKDNIDLIDKTLNRLLIVGNRAYLAGGFGLSVLDVAEARIPATYAKGTKVTDVAKLDNDRLLMLKESVTGLGIVGEDICFLLADGRVYVAANQSFEPELLLSSSADSRLYVTDRGLFICAEIYFIEKGRKTTQFPIADVLGVGAMNESNTAYIALGEEGLAASGLWGTNLMGHAGMVKLYDGNRWTNFDKKTVQEQLFSFNDAIDIAVSNGDPDHFFVGTWGNGLDARVKAIAFDNKGNLWGTLAAIGHKTIYMAVDHNGSVWMGSDIGIFLDKVTVTDIVVDKLNHKWVATQGTGLYLLSEDCSKILAQFTVENSPLLSNNILSLALNDDNG |
3 | 5txoA | 0.39 | 0.16 | 4.60 | 2.03 | CNFpred | | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VPVKLK-PGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGNPYNTPVFVIKKKSTKWRKLIDLRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYYSVPLDEDFRKYTAFTIPSINNETPGI |
4 | 1rw3A | 0.24 | 0.10 | 3.27 | 3.97 | HHsearch | | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------TWLSDFPQAWAETGGAVRQAPL-------------IIPLK-ATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTDYRPVQDLREVNKRVED-----IHPTVPNPLPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDGQLTWTRL |
5 | 3drrA1 | 0.34 | 0.14 | 4.30 | 0.64 | CEthreader | | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGNPYNTPVFAIKKKDTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGI |
6 | 2ja2A | 0.07 | 0.06 | 2.37 | 0.82 | EigenThreader | | YRDVLARLLAAGEAYHAFSTLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDVTFAAGSVPDFALTPLYTLVNPCDDALMTPRQLALHQALIRIGVAERIPTVLGEGTKKLSKRDPQSNLFAHRDRGFIDVADVNSSPARFDQKKADALNAEHIRMLDVGDFTVRLRDHLDTHAAELVQTRIVVLGDAWELLKFFNDDQYVIDGPDGAAVLDAALAALTSVTEAALKDALI--------------EGLALK----------------PRKAFSPIRVAATGTTVSPPLFESL-------ELLGRDRSMQRLRAARQ----------------- |
7 | 1mu2A | 0.37 | 0.13 | 4.01 | 0.69 | FFAS-3D | | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VEPIKIMLKPGDGPKLRQWPLTKEKIEALKEICEKMEKEGQLEEPTNPYNTPTFAIKKKD---RMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKRRITVLDVGDAYFSIPLHEDFRPYTAFTLKR-------- |
8 | 3ig1B | 0.35 | 0.14 | 4.11 | 1.68 | SPARKS-K | | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TVPVKL-KPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGNPYNTPVFAIKKKDTKWRKLVDFRELNKRTQDFW--ELGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSIRYQYNVL |
9 | 5c24B | 0.37 | 0.15 | 4.45 | 1.99 | CNFpred | | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IETVPVKLK-PGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGNPYNTPVFAIKKKDTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGI |
10 | 2j5wA | 0.08 | 0.06 | 2.25 | 0.67 | DEthreader | | --I----Y------KPVWL------PIIKVHLKNASRPYTSHDIGLIGPLIILDKEKEKHIDREFVVMFSVVDEFSWYLENIKTYCSEPVKNRMGNEVDVHAAFFALTNYRIDT-----RHYYIAEYTDASFTNRKERGEEEHLGMFMYGNQPGLT----------------FSAGDLFPQTSLT-----------------------KAEEEHLGILGMATRPY-S-IHAHGVQWKISGIPLIVCKLEFALLFLVFDE-E----AINGRNLQGLTMHVG------VHFHGHSFSSDVFDI-F-PGTYQTLEMFPR------------------ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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