|
Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.90 | 3cu8A | 0.876 | 1.70 | 1.000 | 0.935 | 1.80 | III | complex1.pdb.gz | 42,46,49,50,56,60,127,128,169,172,173,176,180,220,224,228 |
| 2 | 0.87 | 2v7dA | 0.880 | 1.35 | 0.987 | 0.922 | 1.62 | III | complex2.pdb.gz | 49,120,127,128,173,176,180,220,224,228 |
| 3 | 0.70 | 3axyC | 0.884 | 1.68 | 0.658 | 0.943 | 1.53 | III | complex3.pdb.gz | 45,49,117,120,127,128,165,166,169,172,173,176,180,217,220,223,224,227 |
| 4 | 0.61 | 2c23A | 0.892 | 1.03 | 0.884 | 0.918 | 1.81 | III | complex4.pdb.gz | 41,42,45,46,49,117,124,128,173,176,213,216,220,223 |
| 5 | 0.60 | 1a38A | 0.844 | 1.30 | 0.986 | 0.882 | 1.71 | III | complex5.pdb.gz | 49,120,127,169,172,217,220 |
| 6 | 0.50 | 2o02A | 0.873 | 1.33 | 1.000 | 0.914 | 1.90 | III | complex6.pdb.gz | 41,42,45,46,49,117,120,128,165,169,172,173,176,210,211,212,213,216,217,220,224 |
| 7 | 0.47 | 1ib12 | 0.868 | 1.72 | 0.969 | 0.922 | 1.40 | III | complex7.pdb.gz | 11,14,39,42,45,46,49,60,64,165,172,173,176,180,212,213 |
| 8 | 0.47 | 1a37A | 0.757 | 1.38 | 0.979 | 0.796 | 0.80 | III | complex8.pdb.gz | 42,49,123,124,168,169 |
| 9 | 0.38 | 3iqvA | 0.878 | 1.48 | 0.731 | 0.926 | 1.37 | FSC | complex9.pdb.gz | 42,46,117,120,121,165 |
| 10 | 0.35 | 3m501 | 0.832 | 1.75 | 0.661 | 0.890 | 1.48 | III | complex10.pdb.gz | 56,127,172,173,176,180,219,220,223,224,228 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
|