>P62879 (340 residues) MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYA MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNI CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGF AGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYA FTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAM KGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN |
Sequence |
20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN |
Prediction | CHHHHHHHHHHHHHHHHHHHSSSSSCCCCCCSSSSCCCCSSSSCCCCCSSSCCCCCCSSSSSSCCCCCSSSSSSCCCSSSSSSCCCCCSSSSSSCCCCCSSSSSSCCCCCSSSSSSCCCSSSSSSCCCCCCCCSCSSSSCCCCCCSSSSSSCCCCCSSSSSCCCSSSSSSCCCCCSSSSSCCCCCCSSSSSSCCCCCSSSSSSCCCSSSSSSCCCCCSSSSSCCCCCCSSSSSSCCCCCSSSSSSCCCSSSSSSCCCCCSSSSSSCCCCCCCSSSSSSCCCCCSSSSSSCCCSSSSSSCCCCSSSSSSCCCCCCSSSSSSCCCCCSSSSSSCCCSSSSCC |
Confidence | 7179999999999853455056650599965798758980787711007874888977999998999989999289919998689895799996899988999998999989999479929998688898764111784588992899999599968998289929997679995899984889987899998999989998089939999689992678875889978999998999989999389919998689993899882389878789999979999899996899199997899918888738899789999989999899991898399629 |
H:Helix; S:Strand; C:Coil | |
Sequence |
20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN |
Prediction | 6541550253056045205403401237402100023130010224333345115331200000243534000020310111227315332304014331200010252421000031301000106336543402320401443430402035110300232300110306324333405013332303040352321000110100000206435233346415441404120342422000020200120305343302223064141001000103524210000233112413064153233552151303030414524230000204242278 |
Values range from 0 (buried residue) to 8 (highly exposed residue) | |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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SS Seq | CHHHHHHHHHHHHHHHHHHHSSSSSCCCCCCSSSSCCCCSSSSCCCCCSSSCCCCCCSSSSSSCCCCCSSSSSSCCCSSSSSSCCCCCSSSSSSCCCCCSSSSSSCCCCCSSSSSSCCCSSSSSSCCCCCCCCSCSSSSCCCCCCSSSSSSCCCCCSSSSSCCCSSSSSSCCCCCSSSSSCCCCCCSSSSSSCCCCCSSSSSSCCCSSSSSSCCCCCSSSSSCCCCCCSSSSSSCCCCCSSSSSSCCCSSSSSSCCCCCSSSSSSCCCCCCCSSSSSSCCCCCSSSSSSCCCSSSSSSCCCCSSSSSSCCCCCCSSSSSSCCCCCSSSSSSCCCSSSSCC MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN | |||||||||||||||||||
1 | 3dm0A | 0.22 | 0.21 | 6.57 | 1.50 | DEthreader | --AAFNKGETMTINGWAP-VG--MPIPQMSAF---------AAGLVLKGTMRAHTDMVTAIATPIDNDIIVSASRDKSIILWKLTKGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA----GVSTRRFVGHTKDVLSVAFSLNRQIVSASRDRTIKLWNT-LGECKYTISGHRDWVSCVRFSPNTPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA--N-SVIHALCFSPNRYWLCAATEH-GIKIWDLESKSIVEDLKVDVIYCTSLNWSADGSTLFSGYTDGVIRVWG | |||||||||||||
2 | 1b9xA | 0.90 | 0.90 | 25.30 | 2.51 | SPARKS-K | MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN | |||||||||||||
3 | 2pbiD | 0.52 | 0.52 | 14.97 | 0.37 | MapAlign | -ETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTDKNENMKKKSVAM-HTNYLSACSFTNDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA | |||||||||||||
4 | 2pbiD | 0.51 | 0.51 | 14.90 | 0.25 | CEthreader | NETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMKKKSVAMHTNYLSACSFTSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA | |||||||||||||
5 | 1b9xA | 0.90 | 0.90 | 25.30 | 2.07 | MUSTER | MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN | |||||||||||||
6 | 3dm0A | 0.23 | 0.23 | 7.09 | 0.74 | HHsearch | LKSYEEELAKDPRIAATMENAQKGEIRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIATPIDNDIIVSASRDKSIILWKLTYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGV----STRRFVGHTKDVLSVAFSLDNRIVSASRDRTIKLWNTL-GECKYTIEGHRDWVSCVRFSPNTLTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA---NSVIHALCFSPNRYWLCAA-TEHGIKIWDLESKSIVEDLKVDLKKCTSLNWSADGSTLFSGYTDGVIRVWG | |||||||||||||
7 | 1b9xA | 0.90 | 0.90 | 25.30 | 3.28 | FFAS-3D | MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN | |||||||||||||
8 | 3iz6a | 0.44 | 0.44 | 12.99 | 0.62 | EigenThreader | AAATASVNSLRERLRQRRQTLLDTDVEKYSKAQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNSRVLTGHKGYASSCQYVPDQRLITGSGDQTCVLWDVTTGQRISIFGGHTADVLSLSINSLANMFISGSCDTTVRLWDLRTSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNRDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLEGRISCLGLSSDGSALCTGSWDKNLKIWA | |||||||||||||
9 | 3sn6B | 0.90 | 0.90 | 25.30 | 5.18 | CNFpred | QSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN | |||||||||||||
10 | 2pbiD | 0.54 | 0.49 | 13.99 | 1.50 | DEthreader | -------------------------------------EALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKENMAKKKSVAMHTNYLSACSFTNSMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA | |||||||||||||
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Top 10 structural analogs in PDB (as identified by
TM-align)
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Top 5 enzyme homologs in PDB
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Template proteins with similar binding site:
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References: | |
1. | Wei Zheng, Chengxin Zhang, Yang Li, Robin Pearce, Eric W. Bell, Yang Zhang. Folding non-homology proteins by coupling deep-learning contact maps with I-TASSER assembly simulations. In preparation, 2020. |