Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC MAASTMSIRSSAYSDSWQVDDCPESCCEPPCCATSCCAPAPCLTLVCTPVSRVSSPCCQVTCEPSPCQSGCTSSCTPSCCQQSSCQPAYCTSSPCQQACCVPVCCKPVCCVPVCCGASSCCQQSSYQPACCASSSCQPACCVPVCCKPVCCAPTCSEDSYSCCQQSSCQPACCTSSPCQQSYCVPVCCKPVCCKPICCVPVCSGASSLCCQQSGCQPACCTTSCCRPSSSVSLLCRPVCRPACCVPVSSCCAPTSSRQPSYCRQASCVSLLCRPVCSRPACYSFSSGQKSSC |
1 | 3gavA | 0.13 | 0.13 | 4.60 | 2.26 | SPARKS-K | | YSERGDAVCTE---SGWRPLSCEEKSCDNPYINTAKCPAPRCTLKPCDYPDIKHGGLYHENMRRPYFPVAVGKYYSYYCDESYWDHIHCTQDGWSPAVPCLRKCYFPNHGRKFACHPGYALPKAQTTVTCMENGWSPTPRCIRTCSSIDIENGFISESQYTYALKEKAKYQCKLGYVTAGETSGSITCAQPTCIKSCDIPVFMNARTKNDFTWFKLNDTLDYECSNTGSTGSIVCLPICYERECELPKIDVHLVPDRKKDQYKVGEVLKFSCKIVGPNSVQCYHFSPDLPIC |
2 | 3ltfA | 0.21 | 0.10 | 3.05 | 1.06 | CNFpred | | ------------------------------------------------------------------CP-KCHESCTHGCWGEG---PKNCQ--KFSKLTCSPQCA-GGRCYGP--KPRECCHL-FCAGGCTGPTQKDCIACKNFFDEG-VCKEECPPMRGKYAYGATCVKECPGHLLRDNGACVRSCPQDKMDKGGECVPCNGPCPKTCPGV-------------------------------------------------------------------------------- |
3 | 2nbiA1 | 0.18 | 0.17 | 5.71 | 1.28 | MUSTER | | LNPSSQPSECADVLEECPIDECFLPYSDASRPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMLQPTPPEPSSAPSDCGEVIEECPLCFLPTSDPARPPDCTAVGRPDCDVLPFPNNLGC-PACCPFECSPDNPMFTPSPDGSPPNCSPTTPQPSTPTVITSPAPSSQPSQCAEQCPIDECFLPYGDSSRPLDCTDPAVNRPDCDVLPTPQNINCPACCAFECRPDNPMFTPSPDGSPPICSPTSSQPSDCGEVCPIDACFLPKSARPPDC |
4 | 1a39A | 0.06 | 0.05 | 2.47 | 0.52 | CEthreader | | HPQLTTFRCTKRGGCKPATNFIVLDSLWHWIHRAEGLGPGGCGDWGNPPPKDVCPDVESCAKNCIMEGIPDYSQYGVTTNGTSLRLQHILPDGRVPSPRVYLLDKTKRRYEMLHLTGFEFTFDSEMHPTGAKSKYNPGGAYYGTGYCDAQCFVTPFINGLGNIEGKGSCCNEMDIWEANSRASHVAPHTCNKKGLYLCEGEECAFEGVCDKNGCGWNNYRVNV--TDYYGRGEEFKVNTLKPFTVVTQFLANRRGKLEKIHRFYVQDGKVIESFYTNKEGVPYTNMIDDEFC |
5 | 2xm6A | 0.05 | 0.04 | 2.19 | 0.53 | EigenThreader | | SVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYR----KSAEQGNSDGQYYLAHLYDKGAEGVAKNKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGYVQAWAWFDTASTNDMNLFGT |
6 | 1w0rA | 0.12 | 0.11 | 3.99 | 0.25 | FFAS-3D | | -------------PVLCFTQYEESGKCKGLLGGGVSVEDCCLNTAFAYQKRSGGLCQPCRSPRWSLWST--WAPCSVTCSEGSQLRYRRCVGW--NGQCSGKVAPGTLEWQLQACEDQQCCPEMGGWSGWGPWEPCSVTCSKGTRTRRRACNHPAPKCGGHCCDTQQVCPTHGAWTPCSASCHGGPHEPKETRSRKCSAPEPSQKPPGKPCPRCTGLPPCPVAGGWGPWGPVSPCPVTCGLGQTMEQRTCNHPVPQHGGPFCAGDATRTHICNTAVPCPVDGEWSPCIRRN- |
7 | 2qfgA | 0.10 | 0.09 | 3.16 | 2.15 | SPARKS-K | | ------------------------------------------EFEDCNELPPRRNTEILTGSWSDQTYPE-GTQAIYKCYRSLGNVIMVCRKGEWVALNPLRKCQKRPCGHPTLTGGNVFEYGVKAVYTCNLGEINYRECDTIPICEVVKCLPVAPENGKIVSSAMEPDREYHFGQAVRFVCNEEMHCSGFWSKEKKCVEISCKSPDVINGSPISQKIIYKENEFQYKCNGDAVCTPSCEEKSCDNPYIKHRTGDEITYQCYPATRGNTAKCTSGWIPAPRCTLHHHHHH-- |
8 | 5ms9A | 0.17 | 0.09 | 2.81 | 1.03 | CNFpred | | -----------------------SASRSIQHCNIRCMNGGSCSDDHCLCQKYIGTHCGQPVCE-SGCLNGGRCVAPNRCACTYGFTGPQCERDYRTGPCFTVIMCQGQLSGIVSTKTLCCATVGRAWGHPCEMCPAQPHPCRRGFIPNACQDVDECQAIPGLCQGGNCI--------------------------------------------------------------------------------------------------------------------------- |
9 | 5y81A | 0.04 | 0.02 | 1.27 | 0.67 | DEthreader | | ----------------------------------------------------------------L-PTPTNPIKDAFYRGLKPYERLHA--LFAGILREVVLL--PHLNDISIKPILQLAYLPFLMKPLVFALQQYPDLS--------GQDLLRLQ------RQLVLFNMDLFNTVIKFQALLKIFQFVINLLLSFIDIIKWVYFDFPI---------AGTDHPDNWENKTLR-LNILSE------F-KFL------ENILYYCMNALDVLYVKMNLPTIQNLL-----KCI |
10 | 6su8A | 0.08 | 0.08 | 3.03 | 0.89 | MapAlign | | HPKLPTWKCTTEGGCVQQNTSVVLSHPIHEVGNSDVSCVVSGGLNQSLCPNEEECSKNCVVEGANYTSSGVHTDGDALTLNQYVTNGDQVVTASPRVYLLASDDEDGNYSMLQLLGQELSFDVDVSKLVCGMNGALYLSEMDASGGRNSLNPAGAQYGSGYCDAQCGVQPFINGTVNTGSLGACCNELTPHPCSVTSIYACSGAECGSNGVCDKPGCGYNPYALGDHNYYGPGKTVDTSRPFTVVTQFLTNDNTTTGTLTEIRRLYVQPSPSDSVSSITDSFCSTVDSYFE- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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