Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320
| | | | | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCSSSSCCCCCCHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHCCCCSSSSCCCCCHHHHHHHHHHHHHCCCCSSSSSSCCCCCCCCHHHHHHHHHHHHCCCCCSSSSSCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCSSSSCCCCCHHHHHHHHHHHCCCCCCC IISASSSSSKCLSTLKDLDTSDRKEDVLSTSKDLLSKPEKMSMQELNPETSTDCDARQISLQQQLIHVMEHICKLIDTIPDDKLKLLDCGNELLQQRNIRRKLLTEVDFNKSDASLLGSLWRYRPDSLDGPMEGDSCPTGNSMKELNFSHLPSNSVSPGDCLLTTTLGKTGFSLMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQV |
1 | 4cdgA1 | 0.78 | 0.49 | 13.97 | 1.00 | DEthreader | | -------------------------------------------------------------------------------------------------------------------L---KHERFQSL----SFPHTKEMMKIFHKFGLHNFRTNQLEAINAALL--G-EDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPVF |
2 | 4bgdA | 0.13 | 0.12 | 4.31 | 0.53 | MapAlign | | -SDGQLKKFRESLVHSALCILKEQELVLYDAENDVIEATDLGNIASSFYINHASMDVYEGFALNSDIVFIHQNAGRLLRAMFEICLKRGWGHPTRMLLNLCKSATEIPVSFNGFKLPKKFPPPTPLLENISISTSELGNDDFSEVFEFKTFNKIQSQVFESLY--NSNDSVFVGSGKGTGKTAMAELALLNHKGRAVYINPSGEKIDFLLSDWNKLGGKIINKLG-NDPSLNLKLLAK-------SHVLLATPVQFE---LLSRRWRQRKNIQSLELMIYDDAHEISQYGAVYETLISRMIFIATQLKKIRFVCLSNCL--ANARDFGEWAGMTNIYN |
3 | 5lb3B1 | 0.40 | 0.24 | 7.15 | 1.60 | SPARKS-K | | ------------------------------------------------------------------------------------------------------------------------------------SDPERRVRSTLKKFGFDSFTPLQESATMAVVKG--NKDVFVCMPTGAGKSLCYQLPALLAKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYITPEMAASSS-FQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPCVALTATATPQVQEDVFAALHLKKPVA |
4 | 6vz4K1 | 0.11 | 0.09 | 3.44 | 0.78 | EigenThreader | | ---RKKERNLHLQKINSIIDFIKERQSEQWSRQERCFQFGRLGAS------LHNQMEKDEQKRIERTAKQRLAALKSNLLDQTKDTRITQLLRQTNSFLDSLSEAVRAQQNDYYEVAH-----RIKEKIDKQPSILV---------GGTLKEYQLRGLEWMVSLYNNHLNGILADEMGLGKTIQSISLITYLIGPFLVIVP-LSTITNWTLEFEKWAPSLNTIIYKGTPNQRHSLQHQI--RVGNFDVLLTTYEYIIKDKSLLS-------KHDWAHMIIDEGHRMKN---AQSKLSFTISHY---YRTRNRLILTGTPLNLPELWALLNFVLPKIFN |
5 | 4cdgA1 | 0.80 | 0.50 | 14.21 | 0.39 | CEthreader | | --------------------------------------------------------------------------------------------------------------------------LKHERFQSLSFPHTKEMMKIFHKFGLHNFRTNQLEAINAAL---LGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQV |
6 | 4cdgA | 0.79 | 0.50 | 14.13 | 1.25 | MUSTER | | --------------------------------------------------------------------------------------------------------------------------LKHERFQSLSFPHTKEMMKIFHKKGLHNFRTNQLEAINAALL---GEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQV |
7 | 4cdgA | 0.80 | 0.51 | 14.29 | 1.41 | HHsearch | | -------------------------------------------------------------------------------------------------------------------LKHERFQSLSF-------PHTKEMMKIFKKFGLHNFRTNQLEAINAALL---GEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQV |
8 | 5lb3B1 | 0.41 | 0.24 | 7.14 | 2.28 | FFAS-3D | | ---------------------------------------------------------------------------------------------------------------------------------------ERRVRSTLKKFGFDSFKT--PLQESATMAVVKGKDVFVCMPTGAGKSLCYQLPALLAKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYITPEMAASSS-FQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPCVALTATATPQVQEDVFAALHLKKP-- |
9 | 4cdgA | 0.84 | 0.50 | 14.09 | 1.74 | CNFpred | | ---------------------------------------------------------------------------------------------------------------------------------------TKEMMKIFHKFGLHNFRTNQLEAINAALL---GEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQV |
10 | 4cdgA | 0.78 | 0.49 | 13.97 | 1.00 | DEthreader | | -------------------------------------------------------------------------------------------------------------------L---KHERFQSL----SFPHTKEMMKIFHKFGLHNFRTNQLEAINAALL--G-EDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPVF |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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